Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I18
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 234 6e-63
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 33 0.040
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 3.5
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 3.5
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 4.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.6
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 8.1
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 234 bits (573), Expect = 6e-63
Identities = 113/148 (76%), Positives = 128/148 (86%)
Frame = +3
Query: 138 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELY 317
ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP LD+ K+L+
Sbjct: 5 ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64
Query: 318 IKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADISMIGQFGVG 497
I+I P+K L+I DTGIGMTK DL+NNLG IAKSGT FMEA +GADISMIGQFGVG
Sbjct: 65 IRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQFGVG 124
Query: 498 FYSCYLVADRVTVHSKHNDDEQYMWESS 581
FYS YLVAD+V V SKHNDDEQY+WESS
Sbjct: 125 FYSAYLVADKVQVVSKHNDDEQYIWESS 152
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 32.7 bits (71), Expect = 0.040
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +3
Query: 129 GEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 308
G+ + AEI L +N + R++++N L KI DPSK
Sbjct: 2424 GDQKCLTTLAEIGPLSPFKFTDASNNTKFISRDIVANG---LSKILILKDYDPSKAVRKP 2480
Query: 309 ELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 410
++Y K+ + + L D+GI ++ L+ +G
Sbjct: 2481 KIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 186 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 323
+N S +EI L++ I + D I+Y S S ++ +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = -1
Query: 439 KALVPDFAMVPRLLTKSALVMPIPVSMIVSVPSFLLGIIFMYNSLPLSNFDGS 281
KA++P F + +AL+ PI ++ I S +F+ I + S PLS+FDGS
Sbjct: 486 KAVIPIFTNQVSYIN-NALIRPI-IAYINSTRTFIP--ILCHVSKPLSDFDGS 534
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 128 WRGGNLRLPSGNRSAHVIDHQH 193
WRG N PS N SA QH
Sbjct: 106 WRGDNTSKPSANSSAERTSSQH 127
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 495 PRRIDRSYLCRHLHAGPP*KHWCQILQ 415
P ID ++ R L A PP +HW ++LQ
Sbjct: 425 PISIDPGFIDRCL-ASPPVEHWAKVLQ 450
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 4.6
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 216 FLRELISNSSDALDKIRYESL 278
F+R+++ +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.6
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = -1
Query: 478 IILMSAPACRASMKALVPDFAMVPRLLTKSALVMPIPVSMIVSVPSFLLGIIFMYNSLPL 299
+ L++A + + + A + D A P +L + P + + SVP+ L YN
Sbjct: 9 LFLLAAQSLNSGVSASLSDPANTPTILADDIVHGYTPATYLSSVPTLLKRATTSYNYNTS 68
Query: 298 SNFDGSVRDS*RILSNASDEFEISS 224
S S+ S S+ + ++S
Sbjct: 69 SASSSSLTSSSAASSSLTSSSSLAS 93
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 171 LMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDS 302
L+++ +++ + E +L+ L +D LD++ ES PSK S
Sbjct: 63 LLNIPMSSLQTELEKYLKPLPPAINDELDRLANESQDIPSKFKS 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,655
Number of Sequences: 5004
Number of extensions: 47366
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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