Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I17
         (530 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    72   1e-11
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    70   3e-11
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    46   5e-04
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    35   1.0  
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt...    35   1.3  
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu...    35   1.3  
UniRef50_A3YH88 Cluster: Putative uncharacterized protein; n=1; ...    33   4.1  
UniRef50_Q245M1 Cluster: Putative uncharacterized protein; n=1; ...    32   7.2  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 71.7 bits (168), Expect = 1e-11
 Identities = 39/77 (50%), Positives = 42/77 (54%)
 Frame = -2

Query: 394 TSAPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDSXXXXXXXXXXXVMSLL 215
           T APRTA                       AG+GGMWRFYT+DS           VMSLL
Sbjct: 21  TVAPRTAGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSPGLKVGPVPVLVMSLL 80

Query: 214 FIASVFMLHIWGKYTRA 164
           FIASVFMLHIWGKYTR+
Sbjct: 81  FIASVFMLHIWGKYTRS 97


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 70.1 bits (164), Expect = 3e-11
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+GGMWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 46.0 bits (104), Expect = 5e-04
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = -2

Query: 280 FYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           FY++DS           VMSL FI SVF+LH WGKYTR+
Sbjct: 49  FYSEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 298 SGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGK 176
           +G M +FYTDD+           +MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
           Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 80

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 167
           G+  M +FYTD++           +MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 76

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGK 176
           GSG + RFYTD+S            MS+ FI  V MLH   K
Sbjct: 25  GSGSLLRFYTDESPGLKITPVVVLGMSVCFIGFVTMLHAIAK 66


>UniRef50_A3YH88 Cluster: Putative uncharacterized protein; n=1;
           Marinomonas sp. MED121|Rep: Putative uncharacterized
           protein - Marinomonas sp. MED121
          Length = 329

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 25  ESLTYLFHYMIKNTKLYKHHNYTLSNAPPYFSLFHNHPKKNS 150
           E L+Y +H  IK+++L   H+Y    + P+F +F   P  NS
Sbjct: 277 EQLSYAWHVAIKHSRL---HHYKWDKSRPHFEIFQAGPHNNS 315


>UniRef50_Q245M1 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1575

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 157  RNNCFFLDDCEIMKSMVEHLRVCSYGVYII 68
            R N  F DD E MK+  E L  C++ VYII
Sbjct: 1074 RRNNIFADDLEEMKNSYEQLMNCNFHVYII 1103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,619,690
Number of Sequences: 1657284
Number of extensions: 7766994
Number of successful extensions: 18269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18265
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)