Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I17
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.11 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.76 
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    28   0.76 
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   4.0  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 438 VLHLWDLEVDRRVRLLQPHVQLAEALFVNENXXXXXXQPEI 316
           V+++WD+E  + VR L+ H +   AL  N+N      + E+
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEV 229


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 79  HHNYTLSNAPPYFSL---FHNHPKKNSCSLIMLLC 174
           H  Y+L N PP+ +L   FHN P K +  L+ L+C
Sbjct: 501 HAIYSLVNRPPFATLGHVFHNTPMK-AIGLLNLIC 534


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 283 RFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHI 185
           + YTD++           V+S+ FIASVF+LHI
Sbjct: 59  KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 40  LFHYMIKNTKLYKHHNYTLSNAPPYFSLFHN 132
           +FHY+IK     K    TL+N P  F  F+N
Sbjct: 350 VFHYLIKAQAEPKTTKVTLTNLPYEFVRFNN 380


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 438 VLHLWDLEVDRRVRLLQPH 382
           ++HLWD+   RR++ ++ H
Sbjct: 528 LIHLWDIGTGRRIKTMRGH 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,486
Number of Sequences: 5004
Number of extensions: 36327
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)