Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I17
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             38   0.004
11_01_0023 - 162079-162402                                             38   0.004
01_05_0378 + 21628517-21628759                                         36   0.027
12_01_0474 + 3718846-3719097                                           32   0.33 
02_01_0619 - 4640149-4640463,4641216-4641458                           28   5.4  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = -2

Query: 397 ATSAPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDSXXXXXXXXXXXVMSL 218
           AT  PR  +                       G   M RFYTD++           VMSL
Sbjct: 22  ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81

Query: 217 LFIASVFMLHIWGKYTRA 164
            FI  V  LH++GK  R+
Sbjct: 82  CFIGFVTALHVFGKLYRS 99


>11_01_0023 - 162079-162402
          Length = 107

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = -2

Query: 397 ATSAPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDSXXXXXXXXXXXVMSL 218
           AT  PR  +                       G   M RFYTD++           VMSL
Sbjct: 22  ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81

Query: 217 LFIASVFMLHIWGKYTRA 164
            FI  V  LH++GK  R+
Sbjct: 82  CFIGFVTALHVFGKLYRS 99


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 167
           G+  M +FYTD++           +MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 167
           G+  M +FYT+++           +MS+ F A V +LH++GK  R
Sbjct: 35  GTSTMLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79


>02_01_0619 - 4640149-4640463,4641216-4641458
          Length = 185

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +1

Query: 124 FHNHPKKNSCSLIMLLC---ICPKCEA 195
           FH H KKN  ++  L C   ICP C A
Sbjct: 21  FHEHAKKNEKNICCLDCCTSICPHCVA 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,926,241
Number of Sequences: 37544
Number of extensions: 206522
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)