Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I17
         (530 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subuni...    69   1e-11
CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.               69   1e-11
CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.               69   1e-11
BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit prot...    69   1e-11
AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit prot...    69   1e-11
AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation c...    66   1e-10

>L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subunit
           protein.
          Length = 96

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+GGMWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+GGMWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+GGMWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+GGMWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+GGMWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation
           complex beta variant protein.
          Length = 96

 Score = 65.7 bits (153), Expect = 1e-10
 Identities = 31/46 (67%), Positives = 34/46 (73%)
 Frame = -2

Query: 301 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           G+G MWRFYT+DS           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 51  GTGRMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,828,033
Number of Sequences: 237096
Number of extensions: 1169202
Number of successful extensions: 2034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)