Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I17
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    62   3e-10
Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    27   8.4  

>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 27/45 (60%), Positives = 34/45 (75%)
 Frame = -2

Query: 298 SGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 164
           +GG+WRFYT+DS           VMSL+FIASVF+LHIWGK+TR+
Sbjct: 35  NGGLWRFYTEDSTGLKIGPVPVLVMSLVFIASVFVLHIWGKFTRS 79


>Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical
           protein C56G7.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 52  MIKNTKLYKHHNYTLSNAPPYFSLFHNHPKKNSCSLIMLL 171
           M +   +YK    TL+N    FS      +K+  SLIMLL
Sbjct: 271 MCRFCSIYKSQKCTLANTQTIFSEITRQLEKSPLSLIMLL 310


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 429 LWDLEVDRRVRLLQPHVQLAEAL 361
           +W++E+D+RV  L+P+V+ A  +
Sbjct: 76  VWNIEIDQRVFFLRPNVENARKI 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,204
Number of Sequences: 27780
Number of extensions: 205695
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)