Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I17
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.21 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.21 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 196 MLHIWGKYTRA*LRNNCF--FLDDCEIMKSMVEHLRVCSYG---VYIILYF 59
           +L +WG+YT       C   FL D E  K  V  + + +Y    ++IIL++
Sbjct: 190 LLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 196 MLHIWGKYTRA*LRNNCF--FLDDCEIMKSMVEHLRVCSYG---VYIILYF 59
           +L +WG+YT       C   FL D E  K  V  + + +Y    ++IIL++
Sbjct: 190 LLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFY 240


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 7   GXXXXXESLTYLFHYMIKNTKLYKHHNYTLSNAPPYFSLFHNHPKKNSCSL 159
           G     ES  ++  ++ KN +    H+ +  N  P  +   N P+ N+CS+
Sbjct: 125 GYFLNSESKDFI-DFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSI 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,467
Number of Sequences: 438
Number of extensions: 2462
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)