Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I16
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-2|CAB61069.1|  286|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    28   5.1  
U42439-1|AAA83505.1|  130|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL132949-2|CAB61069.1|  286|Caenorhabditis elegans Hypothetical
           protein Y53F4B.2 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 85  KTCRFALLKWNVILAINLLSTTWNFRWKDFYFFSFRR 195
           K+ R  LL WN  LA+  +  TW F   +FY   FRR
Sbjct: 76  KSMRPLLLAWNGFLAVFSIMGTWRF-GIEFYDAVFRR 111


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 210 EFYYLSLMERNVKYDGKFLSFC 275
           ++Y+L    R VKYDGKF+ +C
Sbjct: 221 QYYHLRKAVR-VKYDGKFMKYC 241


>U42439-1|AAA83505.1|  130|Caenorhabditis elegans Hypothetical
           protein F19C7.6 protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 525 IKPNQS---PLLVNLEALYASIISSAFVIQLFFTIGNIFQKIFSNI 397
           I+ NQ+   P+L+ ++ +Y  ++SSA  + LF TI  +   I S I
Sbjct: 30  IQSNQTKMHPILIWIQIIYKFLMSSAVFVGLFSTIVQLIVGILSII 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,447
Number of Sequences: 27780
Number of extensions: 188566
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)