Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I15
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.77 
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   5.4  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   5.4  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    24   9.5  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 169 LVPADPVHYKEYERAAVRRHASHGERRFRNVGAADERQS 285
           L P D +  K Y  +    H++H   +F  + + DE+ S
Sbjct: 404 LKPTDEIINKGYAYSITSSHSNHSNEKFEQIPSPDEKLS 442


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 281 RAERRSLKSTLDSEVEDVE 337
           RA RRS KSTL +   D+E
Sbjct: 169 RANRRSSKSTLKNSANDIE 187


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = +2

Query: 296 SLKSTLDSEVEDVEHTPIIQLRAHVIVMCMYMSVWSVWCYCRLPDRCRLI 445
           ++ S + S +  +    II L   +  + +  S++ +W +CR+  +  L+
Sbjct: 270 AISSFILSSIYKIRKVVIISLLIIIAGLFLISSIYEIWKWCRIRHKAFLL 319


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 185 GSAGTRSIGTPAKFHRARKEHSKPEPC*GSTGSNR 81
           GSAG+R++    +  R  K++  PEP   S   NR
Sbjct: 507 GSAGSRNVYIKRRNQRVLKQNMTPEPSQPSPLVNR 541


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 197 RNMNVQLSE-GTQATENVDLEMWEPQTNDRAERRSLKSTLD 316
           R +N+  +E G+ A++  D+E W P      E  S  + L+
Sbjct: 348 RILNMPTAELGSSASQKYDIEAWMPARQSYGEITSASNCLE 388


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 142 WNFAGVPIDLVPADPVHYKEYERA 213
           +N   +  ++   DPV Y +YE+A
Sbjct: 309 YNLENITYEIFERDPVKYAQYEQA 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,530
Number of Sequences: 5004
Number of extensions: 33835
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)