Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I15
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0208 - 19063811-19063911,19064079-19064208 29 2.3
09_02_0379 - 8210401-8210567,8210944-8213827 28 3.1
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 27 5.3
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 27 5.3
01_06_1753 - 39664219-39665445 27 5.3
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 27 9.3
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 27 9.3
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 27 9.3
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 27 9.3
>05_04_0208 - 19063811-19063911,19064079-19064208
Length = 76
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 5 EVYLVGWGIALIVCGISGAVNLKDYAGYSQCFLSTAPALSALFVPG 142
++Y++ IAL+VCG + A + GY QC + LS + G
Sbjct: 18 KLYIIVACIALLVCGCTTAAHHHQRKGYRQCKSARCIWLSTAILGG 63
>09_02_0379 - 8210401-8210567,8210944-8213827
Length = 1016
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 273 VCGSHISKSTFSVACVPSDSCTFIFLIVHRISRNKINRD 157
VC +++T V C+P D +FL H ++ IN D
Sbjct: 285 VCAEMEARTTIKVECLPQDDAWKLFL--HNVTEATINLD 321
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 342 VCSTSSTSESRVDLRLLLSALSFVCGSHISKSTFSVACVPSDSC 211
VC T+ TSE L LLS+L G S S S +P C
Sbjct: 767 VCPTTQTSEKAAPLSSLLSSL-VAKGLISSPSADSTVAIPQQPC 809
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 194 IRNMNVQLSEGTQATENVDLEMWEPQTNDRAERRSLKSTLDSEVEDVEHT 343
I N+N ++SE + + VDL +E + E +++K+TL ++E T
Sbjct: 1350 IANLNQKISELVENSRGVDLSTYETM---KDELQNIKATLRENSAELERT 1396
>01_06_1753 - 39664219-39665445
Length = 408
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 193 YKEYERAAVRRHASHGERRFRNVGAADERQS*KKESQV-YSRLGGGRCGAHTDNTVTC 363
++E + A R H ER + G A Q + +QV Y+ GGG G N C
Sbjct: 346 HEEKQHAGGRNHYHAYERHEEHGGGAQRYQKYESSTQVGYAGGGGGNGGCVRGNAKPC 403
>08_02_0490 -
17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 287 ERRSLKS----TLDSEVEDVEHTPIIQLRAHVIVMCMYMSVW 400
+RRSLK L ++++ EH PI RA + + + VW
Sbjct: 206 KRRSLKDLTAQVLGAKIQQKEHCPIEDARAAMFIYNKHKKVW 247
>07_01_0935 +
7905748-7905765,7906071-7906096,7906142-7906166,
7906891-7907700,7907803-7907934,7908102-7908470,
7908540-7908671,7909135-7909662
Length = 679
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = +2
Query: 389 MSVWSVWCYCRLPD-RC 436
+SVWS + YC LPD RC
Sbjct: 458 LSVWSSYDYCLLPDQRC 474
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 210 CSCPKARKPRRTSI*KCG 263
CSCP+ KPR S+ + G
Sbjct: 344 CSCPQCEKPRNISVIQAG 361
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 133 RARWNFAGVPIDLVPADPVHYKEYERAAVRRHASHGERRFRN 258
++R N + +P D+ P+D + E + SH +R RN
Sbjct: 254 KSRKNRSDIPYDVPPSDLKQINDQELKKDHKKHSHHQRELRN 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,580
Number of Sequences: 37544
Number of extensions: 263653
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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