Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I15
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    29   1.6  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    29   1.6  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    28   3.7  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    28   3.7  

>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 11   YLVGWGIALIVCGISGAVNLKDYAGYSQCFLSTA-PALSALFVP 139
            YL  +G   +V  IS  +  +DY   S C++ T+ P + A   P
Sbjct: 1004 YLFCYGTPAVVVAISAGIKWEDYGTDSYCWIDTSTPTIWAFVAP 1047


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 11   YLVGWGIALIVCGISGAVNLKDYAGYSQCFLSTA-PALSALFVP 139
            YL  +G   +V  IS  +  +DY   S C++ T+ P + A   P
Sbjct: 1004 YLFCYGTPAVVVAISAGIKWEDYGTDSYCWIDTSTPTIWAFVAP 1047


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 260 TFLNRRSPWLACLRTAARSYSL 195
           T L+ ++PWL CLR  A S  L
Sbjct: 928 THLHEKTPWLRCLRRTASSQDL 949


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 260 TFLNRRSPWLACLRTAARSYSL 195
           T L+ ++PWL CLR  A S  L
Sbjct: 928 THLHEKTPWLRCLRRTASSQDL 949


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 339 CSTSSTSESRVDLRLLLSALSFVCGSHIS 253
           CSTSSTS S V+    +S L F  GSH++
Sbjct: 591 CSTSSTSSSVVEEEEAMS-LPFASGSHLA 618


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 339 CSTSSTSESRVDLRLLLSALSFVCGSHIS 253
           CSTSSTS S V+    +S L F  GSH++
Sbjct: 591 CSTSSTSSSVVEEEEAMS-LPFASGSHLA 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,349,777
Number of Sequences: 27780
Number of extensions: 206988
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)