Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I13
(392 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 87 1e-17
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 87 1e-17
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 87 1e-17
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 87 1e-17
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 87 1e-17
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 87 1e-17
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 87 1e-17
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 87 1e-17
AL023513-1|CAI19979.1| 57|Homo sapiens protein ( Human DNA seq... 43 4e-04
X74262-1|CAA52321.1| 425|Homo sapiens retinoblastoma binding pr... 29 5.5
X71810-1|CAA50685.1| 410|Homo sapiens IEF SSP 9306 protein. 29 5.5
BT007309-1|AAP35973.1| 425|Homo sapiens retinoblastoma binding ... 29 5.5
BC075836-1|AAH75836.1| 425|Homo sapiens retinoblastoma binding ... 29 5.5
BC053904-1|AAH53904.1| 425|Homo sapiens retinoblastoma binding ... 29 5.5
BC015123-1|AAH15123.1| 365|Homo sapiens Similar to retinoblasto... 29 5.5
BC003092-1|AAH03092.1| 425|Homo sapiens retinoblastoma binding ... 29 5.5
AK222779-1|BAD96499.1| 424|Homo sapiens retinoblastoma binding ... 29 5.5
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 55 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 207
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>AL023513-1|CAI19979.1| 57|Homo sapiens protein ( Human DNA
sequence from clone RP1-268D13 on chromosome
22q11.21-12.2. ).
Length = 57
Score = 42.7 bits (96), Expect = 4e-04
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 58 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 168
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>X74262-1|CAA52321.1| 425|Homo sapiens retinoblastoma binding
protein protein.
Length = 425
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 363
>X71810-1|CAA50685.1| 410|Homo sapiens IEF SSP 9306 protein.
Length = 410
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 363
>BT007309-1|AAP35973.1| 425|Homo sapiens retinoblastoma binding
protein 4 protein.
Length = 425
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 363
>BC075836-1|AAH75836.1| 425|Homo sapiens retinoblastoma binding
protein 4 protein.
Length = 425
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 363
>BC053904-1|AAH53904.1| 425|Homo sapiens retinoblastoma binding
protein 4 protein.
Length = 425
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 363
>BC015123-1|AAH15123.1| 365|Homo sapiens Similar to
retinoblastoma-binding protein 4 protein.
Length = 365
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 249 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 303
>BC003092-1|AAH03092.1| 425|Homo sapiens retinoblastoma binding
protein 4 protein.
Length = 425
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 363
>AK222779-1|BAD96499.1| 424|Homo sapiens retinoblastoma binding
protein 4 variant protein.
Length = 424
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 83 KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 253
K + H+D + + +WS + SSGT R L+ + S +S P D + GP
Sbjct: 308 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS--PEDAEDGP 362
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,005,679
Number of Sequences: 237096
Number of extensions: 1031046
Number of successful extensions: 1754
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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