Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I12
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   2.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   3.3  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   5.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   10.0 

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 503 RSLEIPTCNNIP-LLTSVIPP*PNPLSGM*QHQDIFETRLIS*KYNKI 363
           RS + P+CN    L T +I   P P +   QHQ  F   +IS  +N I
Sbjct: 533 RSAKHPSCNCFSHLQTKLIDSGPKPANNSYQHQSNFIGVVISTNHNII 580


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 261 KKITQFFIKRTYYLFEISFIFLTSLPTPI 347
           K+I  FFI +T+YLF   F F+ ++P  I
Sbjct: 440 KEILAFFIDQTWYLFYALF-FICNVPRVI 467


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 SPWLRSFYFMFEDNLT*Y 230
           SPW+ S Y+ F+D+L  Y
Sbjct: 150 SPWVVSLYYAFQDSLYLY 167


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 13  NDMEFSESFASQKHLPEFYYLSLMERSEYWLWE 111
           +D+E  +  A+ +   E+ +L+++E+  Y  WE
Sbjct: 29  DDLELFQKEAAWRRSREYEHLTVLEKKLYEYWE 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,172
Number of Sequences: 5004
Number of extensions: 44448
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)