Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I12
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z49132-11|CAA88991.1|  400|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z48585-11|CAA88487.1|  400|Caenorhabditis elegans Hypothetical p...    28   5.2  

>Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical
           protein F57A8.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 368 YYIFTILNESRIYLDVVTYLIKGLVMGGLQK*GGGCYYML 487
           YYIF+  +E   Y+++ T  I+   + G    G  CYY+L
Sbjct: 155 YYIFSPTSEKTEYINMSTMQIENFNISGNPYVGVICYYIL 194


>Z49132-11|CAA88991.1|  400|Caenorhabditis elegans Hypothetical
           protein ZK673.9 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 19  MEFSESFASQKHLPEFYYLSLMERSEYWLWEIP 117
           M+   + +  K+ P  YY+ L      WLWE P
Sbjct: 296 MQILMAISFPKYKPLEYYIGLRNLGNQWLWEQP 328


>Z48585-11|CAA88487.1|  400|Caenorhabditis elegans Hypothetical
           protein ZK673.9 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 19  MEFSESFASQKHLPEFYYLSLMERSEYWLWEIP 117
           M+   + +  K+ P  YY+ L      WLWE P
Sbjct: 296 MQILMAISFPKYKPLEYYIGLRNLGNQWLWEQP 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,141,339
Number of Sequences: 27780
Number of extensions: 239760
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)