Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I11
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    30   0.22 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   4.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   4.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.4  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 421  YYDFLYSLHISRHHYRKAAAVMYERATR 504
            +Y+ L+S      +YR AAA++YE+ +R
Sbjct: 1019 WYNILFSWRYKHQNYRDAAAIIYEKLSR 1046


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 142 PFQRDERHKLPRRVFQIILLPSYSITRVP 56
           PFQ    H LP +    ILL  Y+++++P
Sbjct: 388 PFQGRLLHVLPAKARSSILLDDYALSKLP 416


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 485 CTSVRHVVVWKRKLK 529
           CTS RHV VWK   K
Sbjct: 131 CTSSRHVYVWKHASK 145


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 433 LYSLHIS--RHHYRKAAAVMYERATRCRVEEKIEGENATGAGRM 558
           +Y  HI+  R + ++  + MYE  +   V+EK+    ATG G +
Sbjct: 317 VYQPHIAKGRVNGKRTLSHMYEFTSTINVDEKLNLTTATGDGNV 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,162
Number of Sequences: 5004
Number of extensions: 29254
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)