Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I11
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1176 + 31494318-31495685                                         28   4.9  
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44...    28   4.9  
04_04_0489 + 25600543-25601368,25601441-25602282                       28   6.5  
04_04_1177 - 31497288-31497647,31497782-31497932,31498017-314982...    27   8.6  
01_05_0604 - 23583244-23584989                                         27   8.6  

>04_04_1176 + 31494318-31495685
          Length = 455

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 498 DTLSCGREN*RRERDWSRTHEMVSG 572
           D+L+CG E     R W R H+M  G
Sbjct: 315 DSLTCGEEYNLETRTWRRIHDMYPG 339


>03_01_0051 +
           445035-445303,445380-445590,445737-445930,446151-446228,
           447049-447141,448495-448525,448729-449058
          Length = 401

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 578 MAAANHFMRPAPVAFSPSIFSST 510
           M+A+  F RP+P AFSPS  + T
Sbjct: 296 MSASPEFYRPSPPAFSPSCAAGT 318


>04_04_0489 + 25600543-25601368,25601441-25602282
          Length = 555

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 DVRACDTLSCGREN*RRERDWSRTHEMV 566
           +VRA DTL   RE     R W R HE V
Sbjct: 179 EVRAMDTLQREREAYAAARAWERRHEKV 206


>04_04_1177 -
           31497288-31497647,31497782-31497932,31498017-31498254,
           31498373-31498583,31498674-31498780,31498877-31498905,
           31499764-31499930
          Length = 420

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 555 ASGSSRVLAFNFLFHTTTCRTLVHHRG 475
           A GS R+L +N+L + +  +TL+  RG
Sbjct: 149 AEGSHRILVYNYLENNSLAQTLLGSRG 175


>01_05_0604 - 23583244-23584989
          Length = 581

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 DVRACDTLSCGREN*RRERDWSRTHEMV 566
           +VRA DTL   RE     R W R HE V
Sbjct: 178 EVRAMDTLQREREAYAAARAWERHHEKV 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,055
Number of Sequences: 37544
Number of extensions: 227841
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)