Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I11
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D83781-1|BAA12110.1| 1314|Homo sapiens nuclear pore protein prot...    65   2e-10
BC125228-1|AAI25229.1| 1436|Homo sapiens nucleoporin 160kDa prot...    65   2e-10
BC125227-1|AAI25228.1| 1436|Homo sapiens nucleoporin 160kDa prot...    65   2e-10

>D83781-1|BAA12110.1| 1314|Homo sapiens nuclear pore protein protein.
          Length = 1314

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 53/197 (26%), Positives = 76/197 (38%), Gaps = 2/197 (1%)
 Frame = +1

Query: 10   FLRKLVTGSDCLTHHQALVLYYMKVIKLFEIHDAGACVVRLAETAISIADKEDPNLATCQ 189
            FL +L+   D        + YY KV++L ++      V++LA +AI+ A  +  + AT +
Sbjct: 906  FLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEASDDWKSQATLR 965

Query: 190  WLVFKWHLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERGELGALVRCPXXXXXXX 369
              +FK HL  G                              ER +L  LV  P       
Sbjct: 966  TCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNE 1025

Query: 370  XXXXXXXXXXXXXX-XNPYYDFLYSLHISRHHYRKAAAVMYERATRC-RVEEKIEGENAT 543
                            + YY+ LY+ HI RH+YRKA  VM+E   R  R    + G    
Sbjct: 1026 VVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQ 1085

Query: 544  GAGRMKWLAAAITCLRL 594
            G        AA+ CLRL
Sbjct: 1086 G----NCYLAALNCLRL 1098


>BC125228-1|AAI25229.1| 1436|Homo sapiens nucleoporin 160kDa protein.
          Length = 1436

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 53/197 (26%), Positives = 76/197 (38%), Gaps = 2/197 (1%)
 Frame = +1

Query: 10   FLRKLVTGSDCLTHHQALVLYYMKVIKLFEIHDAGACVVRLAETAISIADKEDPNLATCQ 189
            FL +L+   D        + YY KV++L ++      V++LA +AI+ A  +  + AT +
Sbjct: 942  FLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLR 1001

Query: 190  WLVFKWHLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERGELGALVRCPXXXXXXX 369
              +FK HL  G                              ER +L  LV  P       
Sbjct: 1002 TCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNE 1061

Query: 370  XXXXXXXXXXXXXX-XNPYYDFLYSLHISRHHYRKAAAVMYERATRC-RVEEKIEGENAT 543
                            + YY+ LY+ HI RH+YRKA  VM+E   R  R    + G    
Sbjct: 1062 VVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQ 1121

Query: 544  GAGRMKWLAAAITCLRL 594
            G        AA+ CLRL
Sbjct: 1122 G----NCYLAALNCLRL 1134


>BC125227-1|AAI25228.1| 1436|Homo sapiens nucleoporin 160kDa protein.
          Length = 1436

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 53/197 (26%), Positives = 76/197 (38%), Gaps = 2/197 (1%)
 Frame = +1

Query: 10   FLRKLVTGSDCLTHHQALVLYYMKVIKLFEIHDAGACVVRLAETAISIADKEDPNLATCQ 189
            FL +L+   D        + YY KV++L ++      V++LA +AI+ A  +  + AT +
Sbjct: 942  FLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLR 1001

Query: 190  WLVFKWHLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERGELGALVRCPXXXXXXX 369
              +FK HL  G                              ER +L  LV  P       
Sbjct: 1002 TCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNE 1061

Query: 370  XXXXXXXXXXXXXX-XNPYYDFLYSLHISRHHYRKAAAVMYERATRC-RVEEKIEGENAT 543
                            + YY+ LY+ HI RH+YRKA  VM+E   R  R    + G    
Sbjct: 1062 VVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQ 1121

Query: 544  GAGRMKWLAAAITCLRL 594
            G        AA+ CLRL
Sbjct: 1122 G----NCYLAALNCLRL 1134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,833,145
Number of Sequences: 237096
Number of extensions: 1091177
Number of successful extensions: 2375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2372
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)