Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I11
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    30   1.1  

>Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical
           protein F53C11.4 protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 446 TSPGTTTEKRPR*CTSVRHVVVWKRKLKARTRL 544
           TSPG  T  R   C+S++ ++ W R+    +RL
Sbjct: 375 TSPGMRTRSRSESCSSLKGILKWPRRPNTMSRL 407


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore complex
            protein protein6, isoform a protein.
          Length = 1562

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 421  YYDFLYSLHISRHHYRKAAAVMYERA 498
            Y++ L++ +++R  +RK A  MYE A
Sbjct: 1123 YFELLFAFYVARKDFRKGACAMYEYA 1148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,235
Number of Sequences: 27780
Number of extensions: 175361
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)