Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I10
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    26   2.7  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   3.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   3.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   3.5  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.6  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 16  RRRGQTLLHLIRTS*LFILVHKDSRNVPDFDKSD 117
           R RG  +LH    S L +L +KD  ++   DKSD
Sbjct: 87  RTRGLLILHTFTFSCLIVLTNKDKSSIK--DKSD 118


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 242 LLASQPIDLWLSTAITGPVSPRALVV 165
           LL    I +WLS A+ GPV+   L+V
Sbjct: 344 LLIGCAIPIWLSNALKGPVASVELLV 369


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -3

Query: 177 GLGSDILTLLLFAVNKMIAGIALVKVWHVP-------RILMYQYKQLTCTDEMKERLAPA 19
           G+  D++T     VNKM    AL+K +H P       R+ +   ++L C   +    AP+
Sbjct: 542 GVNKDLITRPFKNVNKMSVRKALIKPFHPPISKISRTRLTVSSPERLYCAKPISMATAPS 601

Query: 18  SSSA 7
            + +
Sbjct: 602 ETDS 605


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 71  WYIRIRGTCQTLTRAIPAIILLTANNNRVKMSLPR 175
           W +     CQ    A  +I L+  NNNR  + LP+
Sbjct: 237 WLVEFSSVCQ----AAESISLIAVNNNRPPVELPK 267


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 117 IALVKVWHVPRILMYQYKQLTCTDEMKERLAPASSSAS 4
           +A+V    V RIL+YQ +Q   T + ++R   A S A+
Sbjct: 81  LAIVGAVQVSRILVYQRQQKRITAQSEQRTELARSLAA 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,943
Number of Sequences: 5004
Number of extensions: 38232
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)