Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I10
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 29 2.6
12_01_0731 - 6516894-6517473,6517485-6519574 27 8.1
12_01_0727 + 6446283-6449300 27 8.1
12_01_0715 - 6230393-6231559,6233234-6234553 27 8.1
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 8.1
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 27 8.1
07_03_1172 - 24521582-24521714,24522028-24522200,24522459-245226... 27 8.1
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223... 27 8.1
05_04_0451 - 21365617-21366279 27 8.1
04_04_0042 + 22328464-22329858 27 8.1
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +1
Query: 271 RTNHRYRIVGFVD----NTYTGYRPNYRRTYTPNPNDGDECEISDIDEICTHV 417
R N RYR+VGFV+ + Y G+ Y R P +G D T V
Sbjct: 678 RDNSRYRLVGFVEHLGPSMYAGHYVAYVRPSPPQQTNGSSSWFRASDTDITEV 730
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 77 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLIAIGQS 226
I +G+ T+++ + ++L+ +NN +PR + G+L LL A+ S
Sbjct: 810 ISYKGSGLTISKTLRTLVLIDVSNNAFHGRIPRSI---GELVLLRALNMS 856
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 77 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLIAIGQSAAMPT 241
+ +G T+++ + +++L+ +NN S+P + G+L LL + S M T
Sbjct: 823 VTYKGNDMTISKILTSLVLIDVSNNEFHGSIPSNI---GELTLLHGLNMSHNMLT 874
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 77 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLIAIGQS 226
I +G+ T+++ + ++L+ +NN +PR + G+L LL A+ S
Sbjct: 749 ISYKGSGLTISKTLRTLVLIDVSNNAFHGRIPRSI---GELVLLRALNMS 795
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 307 DNTYTGYRPNYRRTYTPNPNDGDECE-ISDIDEICTHVCGNACTESC*ASSGSPLQG 474
D+ GYR N Y NP D CE I++ + T+ C C + + + S QG
Sbjct: 63 DDPSGGYRCNCSHGYEGNPYIKDGCEDINECLDNVTYPCPGICNNTMGSFTCSCHQG 119
>08_02_0246 + 14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 280 HRYRIVGFVDNTYTGYRPNYRRTYTPNPNDGDECEISDIDEICTHVCGNACTESC*AS 453
HR +++ V N + ++ TP N +E + +I EIC + +E AS
Sbjct: 902 HRVQLLLQVLNVKRFHHQQQQQQQTPQNNGQEELTVPEISEICDYFSRRVASEPYDAS 959
>07_03_1172 -
24521582-24521714,24522028-24522200,24522459-24522677,
24523878-24524114,24524332-24524469
Length = 299
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 137 TANNNRVKMSLPRPVVILGQLWLLIAIGQ--SAAMPTEDATMVV 262
T RVK+ PR ++LGQ + LI + + + DAT ++
Sbjct: 97 TVRVTRVKLLKPRDALLLGQAYRLITVDEYKNTTEAAVDATRII 140
>06_01_0308 +
2229025-2229260,2229448-2230145,2230377-2230469,
2230815-2231992
Length = 734
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 322 GYRPNYRRTYTPNPNDGDEC---EISDIDEICTHVCGNACTESC*ASSGS 462
GYR N + Y NP D C I+DI+E N+C C + GS
Sbjct: 291 GYRCNCTQGYEGNPYLKDGCRVVNIADINECNATRFPNSCKGICTNTDGS 340
>05_04_0451 - 21365617-21366279
Length = 220
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 237 GIAAD*PMAINSHNWPSITTGLGSDILTLLLFAVNKMIAGIAL 109
G+A P+A N P + L ++ + LL V ++A +AL
Sbjct: 30 GVAGALPVAENGRGGPLAVSSLNTNTIVLLALLVCGLVAAVAL 72
>04_04_0042 + 22328464-22329858
Length = 464
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 325 YRPNYRRTYTPNPNDGDECEISDIDEICTHVCGNACTESC 444
+ P TY P D C DE+ H CG+ ESC
Sbjct: 131 FNPRVSSTYAALPCSSDTC-----DELDVHRCGHDDDESC 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,044,644
Number of Sequences: 37544
Number of extensions: 259703
Number of successful extensions: 670
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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