Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I10
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   1.8  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    27   5.5  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    27   7.3  
Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 243 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 341
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 PNPNDGDECEISDIDEICTHVCGNACTESC*ASSGS 462
           P  N+ ++C+   I    T +C  +C   C +S G+
Sbjct: 100 PQTNNCNQCQQQCISSCATPICAQSCNNQCSSSCGN 135


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 243 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 341
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 328 RPNYRRTYTPNPNDGDEC-EISDIDEI 405
           +P   +T TPNP+D  E  E++ +DEI
Sbjct: 380 KPKKMKTTTPNPDDASEVEEMNSVDEI 406


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +1

Query: 154 SQNVTTKARGDTGPVMAVDSHRSIGCDANRGCNYGCHKIRTNHRYRIVGF--VDNTYTGY 327
           SQN T+ A G T    AV++ +S G       + G     T+     V +   +++ T  
Sbjct: 656 SQNTTSAANGTT---QAVNNGKS-GSTLPTNSSSGSSDSSTSPSTFTVSYNNTNSSITCI 711

Query: 328 RPNYRRTYTPNPNDGDECEISDIDEICTHVC 420
            P+   TYT +P          + E+ T VC
Sbjct: 712 EPSLNLTYTSSPTSSQIKSSYSVGELITQVC 742


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 96  HVPRILMYQYKQLTCTDEMKERLAPAS 16
           H+P+   YQY  L  TDE      P+S
Sbjct: 183 HIPQPFDYQYTDLLSTDEQNSSAIPSS 209


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 370 GDECEISDIDEICTHVCGNACTE 438
           GD+C+ SDI    T + G  CTE
Sbjct: 330 GDKCQYSDICTSATCLYGGTCTE 352


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 376 ECEISDIDEICTHVCGNACTESC*ASSGS 462
           +C  ++I+  C+  C  AC  SC  S+G+
Sbjct: 65  QCPRAEINSDCSATCVRACIPSCSKSTGN 93


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/79 (20%), Positives = 26/79 (32%)
 Frame = +1

Query: 247 CNYGCHKIRTNHRYRIVGFVDNTYTGYRPNYRRTYTPNPNDGDECEISDIDEICTHVCGN 426
           CN  C+   +N   +        Y        + Y P  N+      ++    C   C N
Sbjct: 214 CNSACNSQCSNICQQTAQATQQVYNQNSNTNTQMYNPYNNNNQGSGSANCAPACQPACDN 273

Query: 427 ACTESC*ASSGSPLQGVTA 483
           +CT    A   +P    T+
Sbjct: 274 SCTSQTPAPMYNPYDASTS 292


>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 41  ISSVQVSCLYWYIRIRGTCQTLTRAIPAIILL 136
           +SS+Q+S LY++  I GT   +   +   IL+
Sbjct: 84  LSSIQISLLYFFPAIEGTLTKIQNLVIRFILI 115


>Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical
           protein C47E8.4 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 163 VTTKARGDTGPVMAVDSHRSIGCDANRGCNYG 258
           + TKA G TGP+   DS   +    +   +YG
Sbjct: 276 IVTKAMGKTGPLFVFDSASDVRIRQDAALDYG 307


>AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical
           protein Y40H7A.1 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
 Frame = -3

Query: 264 VTTIVASSVGIAAD*PMAINSHNWPSI--------TTGLGSDILTLLLFAVNKMIAGIAL 109
           +T +   +   A +  + I S NWP+I          GL   ++ L L+ ++  + G+  
Sbjct: 184 MTEVYYVAASYAVENELGIRSLNWPTIFMVINFALIMGLSFSVILLCLYFIHHKMKGVTY 243

Query: 108 VKVWHVPRILMYQ 70
            KV+   +  +Y+
Sbjct: 244 SKVYEAVQKQLYR 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,056,179
Number of Sequences: 27780
Number of extensions: 225583
Number of successful extensions: 627
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)