Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I10
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.3  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 64  FILVHKDSRNVPDFDKSDSCNHLVNGKQ**SQN---VTTKAR 180
           F  VH+  +NV  +D  +     VNGK+  S N   VTTK +
Sbjct: 103 FYFVHESLKNVLLWDFQECTFISVNGKEVHSGNIEAVTTKEK 144


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 210 INSHNWPSITTGLGSDILTL 151
           ++SH+   I TG G  I+T+
Sbjct: 76  VSSHSSNGIHTGFGGSIITI 95


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 286 YRIVGFVDNTYTGYRPNYRRTYTPN 360
           ++I+  + N Y     NY++ Y  N
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 286 YRIVGFVDNTYTGYRPNYRRTYTPN 360
           ++I+  + N Y     NY++ Y  N
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 286 YRIVGFVDNTYTGYRPNYRRTYTPN 360
           ++I+  + N Y     NY++ Y  N
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNN 103


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 270 YFVTTIVASSVGI 232
           Y VTTI+A+ VGI
Sbjct: 142 YTVTTILAAIVGI 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,734
Number of Sequences: 438
Number of extensions: 2672
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)