Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I09
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 215 3e-57
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 215 3e-57
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 2e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.20
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 1.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 1.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 1.9
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 2.5
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 2.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 4.4
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 4.4
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 215 bits (525), Expect = 3e-57
Identities = 96/129 (74%), Positives = 117/129 (90%)
Frame = +2
Query: 29 RGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIV 208
RGRG ++G K+R++LGLPV A++NCA DN+GAKNLY+++V G RLNRLPAA GDM++
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCA-DNSGAKNLYIVSVFGTGARLNRLPAASCGDMVL 61
Query: 209 ATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVA 388
ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVA
Sbjct: 62 ATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVA 121
Query: 389 KECADLWPR 415
KECADLWPR
Sbjct: 122 KECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 215 bits (525), Expect = 3e-57
Identities = 96/129 (74%), Positives = 117/129 (90%)
Frame = +2
Query: 29 RGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIV 208
RGRG ++G K+R++LGLPV A++NCA DN+GAKNLY+++V G RLNRLPAA GDM++
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCA-DNSGAKNLYIVSVFGTGARLNRLPAASCGDMVL 61
Query: 209 ATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVA 388
ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVA
Sbjct: 62 ATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVA 121
Query: 389 KECADLWPR 415
KECADLWPR
Sbjct: 122 KECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = +2
Query: 185 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 337
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 338 VNNKGEMKGSAITGPVAKE 394
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.20
Identities = 25/84 (29%), Positives = 37/84 (44%)
Frame = -3
Query: 336 MTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPL 157
+ ALSS+Y S L +T +T LSS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 156 IPCTAITYRFFAPVLSVAQLITAP 85
P + A + S AQ IT+P
Sbjct: 837 TPLS-------AALGSAAQSITSP 853
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 414 RGHKSAHSLATGPVIAEPFISPLLF-TMTPALSSKYMNTPSRLLNGF 277
R HK AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 297 SRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 130
+ LLN F L+ +T + S + + ++ EP ++ C ++TYR
Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 325 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 239
++ EI+ HP + FPLP LFP
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 218 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 328
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 163 SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 264
SS ++T CWFW R E G A+ G
Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 203 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 334
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 4.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 366 EPFISPLLFTMTPALSSKYMNTPS 295
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -3
Query: 408 HKSAHSLATGPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLITTA 256
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,457
Number of Sequences: 5004
Number of extensions: 44535
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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