Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I09
(467 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 252 3e-67
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 252 5e-67
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 252 5e-67
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 252 5e-67
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 252 5e-67
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 252 5e-67
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 252 5e-67
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 240 2e-63
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 142 5e-34
BC101482-1|AAI01483.1| 655|Homo sapiens hypothetical protein LO... 29 8.0
BC065706-1|AAH65706.1| 564|Homo sapiens C12orf51 protein protein. 29 8.0
AK091473-1|BAC03671.1| 655|Homo sapiens protein ( Homo sapiens ... 29 8.0
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 252 bits (618), Expect = 3e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 252 bits (617), Expect = 5e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 252 bits (617), Expect = 5e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 252 bits (617), Expect = 5e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 252 bits (617), Expect = 5e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 252 bits (617), Expect = 5e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 252 bits (617), Expect = 5e-67
Identities = 119/132 (90%), Positives = 128/132 (96%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
M++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60 MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Query: 380 PVAKECADLWPR 415
PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 240 bits (587), Expect = 2e-63
Identities = 113/126 (89%), Positives = 122/126 (96%)
Frame = +2
Query: 38 GGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATV 217
GGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATV
Sbjct: 1 GGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV 59
Query: 218 KKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKEC 397
KKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKEC
Sbjct: 60 KKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKEC 119
Query: 398 ADLWPR 415
ADLWPR
Sbjct: 120 ADLWPR 125
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 142 bits (344), Expect = 5e-34
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = +2
Query: 20 MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
MSKRGRGGS+GAKFRISLGLPVGAVINCA DNTGAKNLY+I+V+GIKGRLNRLPAAG GD
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCA-DNTGAKNLYIISVKGIKGRLNRLPAAGVGD 59
Query: 200 MIVATVKKGKPELRKK 247
M++ATVKKGKPELRKK
Sbjct: 60 MVMATVKKGKPELRKK 75
>BC101482-1|AAI01483.1| 655|Homo sapiens hypothetical protein
LOC283450 protein.
Length = 655
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 321 SSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFL 217
S + NTP + + GF C + + +S GLPFL
Sbjct: 497 SGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFL 531
>BC065706-1|AAH65706.1| 564|Homo sapiens C12orf51 protein protein.
Length = 564
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 321 SSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFL 217
S + NTP + + GF C + + +S GLPFL
Sbjct: 495 SGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFL 529
>AK091473-1|BAC03671.1| 655|Homo sapiens protein ( Homo sapiens
cDNA FLJ34154 fis, clone FCBBF3013058. ).
Length = 655
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 321 SSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFL 217
S + NTP + + GF C + + +S GLPFL
Sbjct: 497 SGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFL 531
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,961,329
Number of Sequences: 237096
Number of extensions: 1867954
Number of successful extensions: 8338
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8329
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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