Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I09
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   239   7e-64
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    32   0.24 
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    32   0.24 
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    32   0.24 
Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  239 bits (585), Expect = 7e-64
 Identities = 113/132 (85%), Positives = 123/132 (93%)
 Frame = +2

Query: 20  MSKRGRGGSAGAKFRISLGLPVGAVINCATDNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 199
           MSKRGRGG++GAKFRISLGLPVGAV+NCA DNTGAKNL+VI+V GI+GRLNRLP+AG GD
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCA-DNTGAKNLFVISVYGIRGRLNRLPSAGVGD 59

Query: 200 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 379
           M V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60  MFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITG 119

Query: 380 PVAKECADLWPR 415
           PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 61  PHLAGSPSGSCDQLCDR*YRSKKSV--CDCRTRYQGS 165
           PH  G    +C     R + SKKSV  C C+ RYQ S
Sbjct: 16  PHFGGVSCRACAAFFRRYFHSKKSVISCTCQIRYQNS 52


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +2

Query: 71  LGLPVGAVINCATDNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 241
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 242 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 325
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 61  PHLAGSPSGSCDQLCDR*YRSKKSV--CDCRTRYQGS 165
           PH  G    +C     R + SKKSV  C C+ RYQ S
Sbjct: 18  PHFGGVSCRACAAFFRRYFHSKKSVISCTCQIRYQNS 54


>Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6a protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 61  PHLAGSPSGSCDQLCDR*YRSKK--SVCDCRTRYQGSSEQVTSC 186
           PH  G+   +C     R Y SKK    C C+TR Q ++    SC
Sbjct: 12  PHFGGTSCRACAAFFRRFYHSKKLGLKCTCKTR-QSNAHPCRSC 54


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 165 RPLIPCTAITYRFFAPVLSVAQLITAPTGRPSEMRN 58
           RPL+ C  + +  F P+++V  +   P   P+   N
Sbjct: 2   RPLLSCFPVIFAVFGPIIAVKPVWKTPVSEPNPNAN 37


>Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical
           protein M04B2.5 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 258 AGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSVAQLIT 91
           +GI+FF +    F++++TI   +    N+   PLI    I + F  P+L V   +T
Sbjct: 357 SGISFFHAFYFSFISMSTIGLGDVMPNNVTFSPLI---TIMFFFGMPILKVVNRVT 409


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 345  TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 437
            TRGR  A+   + ++R  L +  VLR TPAP
Sbjct: 1217 TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 1246


>AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical
           protein CE7X_3.2 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 345 TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 437
           TRGR  A+   + ++R  L +  VLR TPAP
Sbjct: 90  TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 119


>Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical
           protein C06G8.3b protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = -3

Query: 405 KSAHSLA---TGPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLI--TTAGI-TF 244
           ++ HSL    T P +       LL ++T A++  + +    LL GF   +  + A I T 
Sbjct: 161 RTRHSLVVEETAPWVVSDEKRNLLKSLTFAIAMSFHS----LLEGFALGVQDSDAAIWTL 216

Query: 243 FLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSVAQLITAPTGRPS 70
           FLS  L     A  +  + +  N  ++ ++ CT + Y    P+ SV   +   TG  S
Sbjct: 217 FLSLLLHKSIEAFSVGLQISRANTEKKGIVMCTILVYALMTPLGSVLGTLLQNTGDKS 274


>U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical
           protein R07G3.5 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 277 PLPDHHCWHYLFPEFW 230
           P+PDH  W  L PEF+
Sbjct: 178 PVPDHKTWRPLDPEFY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,424
Number of Sequences: 27780
Number of extensions: 270056
Number of successful extensions: 763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)