Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I08
(567 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9Y230 Cluster: RuvB-like 2; n=107; Eukaryota|Rep: RuvB... 268 6e-71
UniRef50_Q4UBZ8 Cluster: DNA helicase (RuvB-like protein), putat... 195 7e-49
UniRef50_A7S8Z2 Cluster: Predicted protein; n=2; Nematostella ve... 122 4e-48
UniRef50_Q97W00 Cluster: TATA binding protein (TBP)-interacting ... 189 5e-47
UniRef50_A3BLJ5 Cluster: Putative uncharacterized protein; n=2; ... 181 1e-44
UniRef50_A5JZT2 Cluster: RuvB-like 1, putative; n=7; Plasmodium|... 176 3e-43
UniRef50_Q9Y265 Cluster: RuvB-like 1; n=91; Eukaryota|Rep: RuvB-... 173 2e-42
UniRef50_Q5KPZ8 Cluster: RuvB-like helicase 1; n=17; Eukaryota|R... 166 3e-40
UniRef50_Q8TZC3 Cluster: DNA helicase TIP49, TBP-interacting pro... 164 1e-39
UniRef50_Q4U921 Cluster: RuvB-like DNA repair helicase, putative... 151 1e-35
UniRef50_Q8SU27 Cluster: Putative uncharacterized protein ECU11_... 142 5e-33
UniRef50_Q4N1R6 Cluster: DNA helicase RuvB, putative; n=1; Theil... 111 1e-23
UniRef50_Q6E6A5 Cluster: Putative uncharacterized protein; n=1; ... 80 4e-14
UniRef50_Q05CB6 Cluster: Spg3a protein; n=2; Murinae|Rep: Spg3a ... 50 4e-05
UniRef50_Q0IFL1 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_Q6E6B3 Cluster: DNA helicase domain-like protein; n=1; ... 43 0.006
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 41 0.018
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 40 0.054
UniRef50_A4T049 Cluster: 5-nucleotidase; n=14; Proteobacteria|Re... 39 0.094
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 38 0.16
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 38 0.22
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 37 0.38
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 36 0.50
UniRef50_Q0IMR9 Cluster: Os12g0550700 protein; n=3; Oryza sativa... 36 0.66
UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1; Nitro... 36 0.87
UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2; ... 36 0.87
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 35 1.2
UniRef50_P47658 Cluster: DNA polymerase III subunit gamma/tau; n... 35 1.2
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 35 1.5
UniRef50_Q2AEL1 Cluster: Regulatory protein GntR, HTH; n=1; Halo... 35 1.5
UniRef50_A1SFG3 Cluster: AAA ATPase, central domain protein; n=1... 35 1.5
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 35 1.5
UniRef50_Q8EWC6 Cluster: Holliday junction DNA helicase; n=1; My... 34 2.0
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 34 2.0
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 34 2.0
UniRef50_Q2M075 Cluster: GA10596-PA; n=1; Drosophila pseudoobscu... 34 2.0
UniRef50_Q0UIK1 Cluster: Putative uncharacterized protein; n=1; ... 34 2.0
UniRef50_P29569 Cluster: Cell division control protein 6 homolog... 34 2.0
UniRef50_Q5QWS2 Cluster: DNA polymerase III, gamma/tau subunits;... 34 2.7
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 34 2.7
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 34 2.7
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 34 2.7
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 33 3.5
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 33 3.5
UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and ... 33 3.5
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 33 3.5
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 33 3.5
UniRef50_A2F1F9 Cluster: Putative uncharacterized protein; n=1; ... 33 3.5
UniRef50_UPI00015B4E0D Cluster: PREDICTED: similar to ENSANGP000... 33 4.7
UniRef50_UPI000045BE3B Cluster: hypothetical protein Npun0200505... 33 4.7
UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits; ... 33 4.7
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 33 4.7
UniRef50_Q0HHZ2 Cluster: DNA polymerase III, subunits gamma and ... 33 4.7
UniRef50_A1RIP8 Cluster: DNA polymerase III, subunits gamma and ... 33 4.7
UniRef50_A0KY06 Cluster: DNA polymerase III, subunits gamma and ... 33 4.7
UniRef50_Q38BI3 Cluster: Putative uncharacterized protein; n=1; ... 33 4.7
UniRef50_Q6ML73 Cluster: ATP-dependent protease LA; n=1; Bdellov... 33 6.2
UniRef50_Q0LFU1 Cluster: ATP-binding region, ATPase-like precurs... 33 6.2
UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella t... 33 6.2
UniRef50_A4WS41 Cluster: Mu-like prophage major head subunit gpT... 33 6.2
UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau... 33 6.2
UniRef50_Q9VKC2 Cluster: CG12317-PA, isoform A; n=4; Diptera|Rep... 33 6.2
UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau; n... 33 6.2
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 32 8.1
UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and t... 32 8.1
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 32 8.1
UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and ... 32 8.1
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 32 8.1
UniRef50_A0LKQ5 Cluster: AAA ATPase, central domain protein; n=1... 32 8.1
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 32 8.1
UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n... 32 8.1
>UniRef50_Q9Y230 Cluster: RuvB-like 2; n=107; Eukaryota|Rep:
RuvB-like 2 - Homo sapiens (Human)
Length = 463
Score = 268 bits (657), Expect = 6e-71
Identities = 124/173 (71%), Positives = 151/173 (87%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EGKAE+IPGVLFIDE HMLDIE FSFLNRALES+ APV+IMATNRGITRIRGT+Y+SPHG
Sbjct: 286 EGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHG 345
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP+DLLDR++IV TTPY+ ++ ++IL IRCEEED +MS DA TVLTR+ ETSLRYAIQL
Sbjct: 346 IPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQL 405
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGD 523
IT ASLV ++RK TEV ++D+K+VYS FLDE RS Q++KEYQD F+F++ G+
Sbjct: 406 ITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGE 458
>UniRef50_Q4UBZ8 Cluster: DNA helicase (RuvB-like protein),
putative; n=1; Theileria annulata|Rep: DNA helicase
(RuvB-like protein), putative - Theileria annulata
Length = 492
Score = 195 bits (475), Expect = 7e-49
Identities = 95/190 (50%), Positives = 134/190 (70%), Gaps = 21/190 (11%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNR---------------------ALESETAPVV 121
+G+AE+I GVLFIDE HMLDIECFS+L+R ALE++ P+V
Sbjct: 292 DGRAELIQGVLFIDEVHMLDIECFSYLSRFRLFTQYYLLRYLYSFILFVRALEADNCPIV 351
Query: 122 IMATNRGITRIRGTNYRSPHGIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSG 301
IMATNRGITRIRGT+Y+SPHGIPLD+LDR++I+PT PY ++ + I+ RC EED +
Sbjct: 352 IMATNRGITRIRGTDYKSPHGIPLDVLDRVLIIPTFPYQPEDTKLIITERCTEEDVDVEE 411
Query: 302 DALTVLTRVATETSLRYAIQLITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLK 481
D+L +L +VAT+ SLRYA+QLIT +SL+ KR+ V+ +D+K+ ++ FLD RS ++L
Sbjct: 412 DSLELLVKVATDISLRYALQLITASSLIRKRKGGGSVTCDDIKRSFNLFLDSKRSTKYLI 471
Query: 482 EYQDEFMFDD 511
+Q ++MF +
Sbjct: 472 NFQHDYMFSE 481
>UniRef50_A7S8Z2 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 556
Score = 122 bits (293), Expect(2) = 4e-48
Identities = 55/81 (67%), Positives = 69/81 (85%)
Frame = +2
Query: 269 RCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAKRRKATEVSMEDVKKVYSSF 448
+CEEED +MS DA+ VLT++A ETSLRY+IQLIT ASLV ++RK TEV+M+D+K+VYS F
Sbjct: 458 KCEEEDVEMSDDAMMVLTKIAQETSLRYSIQLITAASLVCRKRKGTEVAMDDIKRVYSLF 517
Query: 449 LDEHRSEQFLKEYQDEFMFDD 511
DE RS QFLKEYQ EFMF++
Sbjct: 518 FDESRSTQFLKEYQQEFMFNE 538
Score = 92.3 bits (219), Expect(2) = 4e-48
Identities = 40/49 (81%), Positives = 47/49 (95%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITR 151
EGKA+++PGVLF+DE HMLDIECFSFLNRALES+ APV+IMATNRGIT+
Sbjct: 410 EGKADIVPGVLFVDEVHMLDIECFSFLNRALESDMAPVLIMATNRGITK 458
>UniRef50_Q97W00 Cluster: TATA binding protein (TBP)-interacting
protein (TIP49-like), putative; n=20; Archaea|Rep: TATA
binding protein (TBP)-interacting protein (TIP49-like),
putative - Sulfolobus solfataricus
Length = 476
Score = 189 bits (460), Expect = 5e-47
Identities = 84/164 (51%), Positives = 123/164 (75%)
Frame = +2
Query: 2 HEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPH 181
++G+AE++ GVLFID+AH LD+E FSFL RALESE AP++I+ATNRG+T+IRGT+ SPH
Sbjct: 309 NQGRAELVVGVLFIDDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIRGTDIESPH 368
Query: 182 GIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQ 361
GIPLDLLDR++I+PT PY E++EI+ IR +E + ++ AL LT++ E SLRY++Q
Sbjct: 369 GIPLDLLDRLLIIPTRPYNADEIKEIIKIRADELEIELDPQALEELTKIGVENSLRYSVQ 428
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQD 493
L+ + ++A+R + + +EDV F D RS +F+KEY++
Sbjct: 429 LLEPSLIIAQRNNRSIIKVEDVVIASKLFSDVKRSVKFVKEYEN 472
>UniRef50_A3BLJ5 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 957
Score = 181 bits (440), Expect = 1e-44
Identities = 87/170 (51%), Positives = 122/170 (71%), Gaps = 1/170 (0%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EGKAE++P DIECFSFLNRALE++ P++++ATNRGIT IRG NY+S HG
Sbjct: 142 EGKAEIVP-----------DIECFSFLNRALENDVTPILVIATNRGITSIRGINYQSLHG 190
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMS-GDALTVLTRVATETSLRYAIQ 361
IP D L+R++I+ T PYT ++ ++L+IRC+EED +MS A +LT++ ET+LRYAI
Sbjct: 191 IPPDFLNRLLIITTQPYTEDDIPKVLDIRCDEEDVEMSTAYAKVLLTKIGVETALRYAIH 250
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDD 511
LIT+A+L ++ V MED+ +VY FLD RS Q+L EYQ ++MF++
Sbjct: 251 LITSAALAWQKHMGKIVEMEDISRVYQLFLDVKRSAQYLMEYQSQYMFNE 300
>UniRef50_A5JZT2 Cluster: RuvB-like 1, putative; n=7;
Plasmodium|Rep: RuvB-like 1, putative - Plasmodium vivax
Length = 583
Score = 176 bits (429), Expect = 3e-43
Identities = 82/167 (49%), Positives = 119/167 (71%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
+G A+++PGVLFIDE HMLDIECF++LNR LES AP+VI+ATNRGI I+GTN S HG
Sbjct: 417 QGIAQIVPGVLFIDEVHMLDIECFTYLNRTLESNLAPIVILATNRGICNIKGTNIISAHG 476
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP+DLLDR+IIV T Y +E+ ++L +RC+ E ++ +AL L + + SLRYAIQL
Sbjct: 477 IPVDLLDRIIIVKTMLYNKEEILQVLKLRCKFEKIKIENEALNYLADIGIQCSLRYAIQL 536
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMF 505
+T A +++KR+ ++ V+ V S F D RS Q L + ++++++
Sbjct: 537 LTPAKILSKRKGKKRINKSIVEIVSSIFFDTKRSTQLLLDDKNKYLY 583
>UniRef50_Q9Y265 Cluster: RuvB-like 1; n=91; Eukaryota|Rep:
RuvB-like 1 - Homo sapiens (Human)
Length = 456
Score = 173 bits (421), Expect = 2e-42
Identities = 83/167 (49%), Positives = 119/167 (71%), Gaps = 1/167 (0%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGT-NYRSPH 181
+G AE++PGVLF+DE HMLDIECF++L+RALES AP+VI A+NRG IRGT + SPH
Sbjct: 289 QGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPH 348
Query: 182 GIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQ 361
GIPLDLLDR++I+ T YT QE+++I+ IR + E +S +AL L + T+T+LRY++Q
Sbjct: 349 GIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQ 408
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFM 502
L+T A+L+AK + E V+++ F D S + L + QD++M
Sbjct: 409 LLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
>UniRef50_Q5KPZ8 Cluster: RuvB-like helicase 1; n=17; Eukaryota|Rep:
RuvB-like helicase 1 - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 484
Score = 166 bits (404), Expect = 3e-40
Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 11/174 (6%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNY----- 169
+G AE++PGVLFIDE HMLD+ECF++LNRALES +P V++A+NRGI+ IRGT Y
Sbjct: 306 QGVAELVPGVLFIDEVHMLDMECFTYLNRALESPMSPYVVLASNRGISTIRGTEYDGVAG 365
Query: 170 ------RSPHGIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVA 331
R+PHG+P+DLLDR +IV T YT E+R I+ +RC+ E +S +A+ L
Sbjct: 366 SASEGIRAPHGLPVDLLDRCMIVKTQLYTRDEIRRIVEMRCKVEGIAISSEAVDKLADEG 425
Query: 332 TETSLRYAIQLITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQD 493
+SLRYA+QL+T A +V+K + EV + DV+++ FLD RS L+ +D
Sbjct: 426 ERSSLRYALQLLTPAGIVSKNKGKGEVGVADVEELGELFLDAKRSAGVLRSTED 479
>UniRef50_Q8TZC3 Cluster: DNA helicase TIP49, TBP-interacting
protein; n=1; Methanopyrus kandleri|Rep: DNA helicase
TIP49, TBP-interacting protein - Methanopyrus kandleri
Length = 455
Score = 164 bits (399), Expect = 1e-39
Identities = 76/164 (46%), Positives = 113/164 (68%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EG+A ++PGVLFIDEAHMLDIE F+FLNR+LE E AP+++MATNR + ++RGT+ +PHG
Sbjct: 283 EGEASLVPGVLFIDEAHMLDIEAFAFLNRSLEEEIAPILVMATNRAMAKVRGTDEEAPHG 342
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP DLLDRM+I T P+ E+ EI+ IR +D Q++ +A LT + E S+RYA +L
Sbjct: 343 IPGDLLDRMLIARTRPFERHEIHEIIGIRARVQDIQLTDEAHEYLTDLGEEKSIRYATRL 402
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDE 496
+ A +VA++ + V + V++V F D S ++++ + E
Sbjct: 403 LEPARIVAEKEGSEVVEKKHVERVEEVFTDVSDSVEYMERMRRE 446
>UniRef50_Q4U921 Cluster: RuvB-like DNA repair helicase, putative;
n=8; Aconoidasida|Rep: RuvB-like DNA repair helicase,
putative - Theileria annulata
Length = 494
Score = 151 bits (366), Expect = 1e-35
Identities = 71/165 (43%), Positives = 108/165 (65%)
Frame = +2
Query: 8 GKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGI 187
G AE+IPGVL+IDE HM DIECF++L++ +ES +P+VI++TNRGI+ +RG+++ HGI
Sbjct: 329 GIAEVIPGVLYIDEVHMFDIECFTYLSKVMESPLSPIVILSTNRGISSVRGSDFIEAHGI 388
Query: 188 PLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLI 367
P DLLDR++I+ T PYT E+ +IL IR + E+ +S L L + +SLRY IQLI
Sbjct: 389 PADLLDRLLIIKTVPYTIHEMVQILKIRSKVENVPISDQGLKRLGEIGLNSSLRYCIQLI 448
Query: 368 TTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFM 502
+ ++++ + V + + S F+D S Q + E D F+
Sbjct: 449 SPSNVLRNLEEKLTVESKHIDDADSLFMDSKTSAQRIVEQSDLFI 493
>UniRef50_Q8SU27 Cluster: Putative uncharacterized protein
ECU11_1270; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU11_1270 - Encephalitozoon
cuniculi
Length = 418
Score = 142 bits (344), Expect = 5e-33
Identities = 68/157 (43%), Positives = 105/157 (66%)
Frame = +2
Query: 2 HEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPH 181
+EGKAE++ GVLFIDE HMLDIE F+FLN+A+E + PV++++TN+G +RGT+ SP+
Sbjct: 259 NEGKAEIVRGVLFIDEVHMLDIESFAFLNKAVEEDFCPVILVSTNKGECIVRGTDEPSPY 318
Query: 182 GIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQ 361
GIP D +DR +I+ + ++L IL R EED + DA+ L ++ + LRY++
Sbjct: 319 GIPRDFIDRALIISMEKHCRRDLEAILRHRILEEDILIDDDAVDRLVSISEASGLRYSMN 378
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQ 472
L+T +S+ A RR V++ DV++ + FLDE R +
Sbjct: 379 LLTISSMRASRRNG-RVALGDVERAFELFLDEARGTE 414
>UniRef50_Q4N1R6 Cluster: DNA helicase RuvB, putative; n=1;
Theileria parva|Rep: DNA helicase RuvB, putative -
Theileria parva
Length = 434
Score = 111 bits (267), Expect = 1e-23
Identities = 45/81 (55%), Positives = 66/81 (81%)
Frame = +2
Query: 8 GKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGI 187
G AE+IPGVL+IDE HM DIECF++L++ +ES +P++I++TNRGI+ +RG+++ HGI
Sbjct: 353 GIAEVIPGVLYIDEVHMFDIECFTYLSKVMESPLSPIIILSTNRGISSVRGSDFIEAHGI 412
Query: 188 PLDLLDRMIIVPTTPYTHQEL 250
P DLLDR++I+ T PYT E+
Sbjct: 413 PADLLDRLLIIKTVPYTIHEV 433
>UniRef50_Q6E6A5 Cluster: Putative uncharacterized protein; n=1;
Antonospora locustae|Rep: Putative uncharacterized
protein - Antonospora locustae (Nosema locustae)
Length = 90
Score = 79.8 bits (188), Expect = 4e-14
Identities = 37/91 (40%), Positives = 57/91 (62%)
Frame = +2
Query: 200 LDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTAS 379
LDR+I+V T Y+ ELR I+ +RCEEE M D L VL +AT L+YA+ L+T ++
Sbjct: 1 LDRVIVVRTDKYSENELRHIIKVRCEEESIGMDNDTLRVLVDIATRGGLKYALNLLTLSN 60
Query: 380 LVAKRRKATEVSMEDVKKVYSSFLDEHRSEQ 472
+ A +R +S+ D+++ Y F+D R+ Q
Sbjct: 61 VRASKR-GVRMSVADIQRTYELFMDPFRATQ 90
>UniRef50_Q05CB6 Cluster: Spg3a protein; n=2; Murinae|Rep: Spg3a
protein - Mus musculus (Mouse)
Length = 67
Score = 50.0 bits (114), Expect = 4e-05
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +2
Query: 212 IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAK 391
+I+ T YT QE+++I I+ + E +S +AL+ L + T+T+ Y++QL+T A+L+AK
Sbjct: 1 MIIRTMLYTPQEMKQITEIQAQTEGINISEEALSHLGEIGTKTTPTYSVQLLTPANLLAK 60
>UniRef50_Q0IFL1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 141
Score = 47.2 bits (107), Expect = 3e-04
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = -1
Query: 483 SLRNCSDLCSSRNDE*TFFTSSILTSVAFLLLATRDAVVISWMAYXXXXXXXXXXXXXXX 304
S RN +D +S+N+ T SS++ V L L A V SW AY
Sbjct: 7 SCRNFADRLASKNNPLTSTISSLVICVRPLTLQFWCAGVSSWTAYRRVVLSPISLNAWMA 66
Query: 303 SPDI*QXXXXXXXXXXXXXSWWV*GVVGTMIILSSRSRGIPWG-LR*FVPLILVMPLFVA 127
S + G V T+ S++S GIPWG + VP I PL VA
Sbjct: 67 ESSTLNPSVCALSLMICSISDRLYGAVRTISKRSNKSNGIPWGEIMSSVPRITQRPLLVA 126
Query: 126 IMTTGAVSDS 97
MT GA++DS
Sbjct: 127 KMTIGAIADS 136
>UniRef50_Q6E6B3 Cluster: DNA helicase domain-like protein; n=1;
Antonospora locustae|Rep: DNA helicase domain-like
protein - Antonospora locustae (Nosema locustae)
Length = 352
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/47 (40%), Positives = 34/47 (72%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGI 145
+G AE+ GVLF+DEA +LD ++L++ E +P+++++TN+GI
Sbjct: 287 KGLAEIHMGVLFVDEAQVLDRFSLAYLSKICEG-ASPLIVLSTNKGI 332
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 41.1 bits (92), Expect = 0.018
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDEAHML E F+ L + LE + VV I+AT TN P IP ++ R
Sbjct: 120 VYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILAT---------TN---PEKIPQTIISR 167
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
++ +++++ + L CE E ++S +A+ +++ A LR A+ ++ A
Sbjct: 168 CQVIDFKNISNKDIIKRLEFVCENEGIKISHEAIVEISKRA-NGGLRDALTILEQVINSA 226
Query: 389 KRRKATEVSMEDVKK 433
+ ++ +EDV++
Sbjct: 227 GK----DIKIEDVRE 237
>UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: DnaX
protein - Listeria innocua
Length = 579
Score = 39.5 bits (88), Expect = 0.054
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 1/149 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE V+ I+AT PH +PL ++ R
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTE------------PHKLPLTIISR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ T Q++ L EEE AL ++ R A E +R A+ L+
Sbjct: 170 VQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVAR-AAEGGMRDALSLLDQVISYG 228
Query: 389 KRRKATEVSMEDVKKVYSSFLDEHRSEQF 475
E ++E V + L + S F
Sbjct: 229 SEEVTVEDALEITGSVAQNLLTKLVSAAF 257
>UniRef50_A4T049 Cluster: 5-nucleotidase; n=14; Proteobacteria|Rep:
5-nucleotidase - Polynucleobacter sp. QLW-P1DMWA-1
Length = 305
Score = 38.7 bits (86), Expect = 0.094
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +2
Query: 302 DALTVLTRVATETSLRYAIQLITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLK 481
+AL L R +E +R L+T S A R + + + FL +FL+
Sbjct: 206 EALHRLQRSTSENGMRIRTALVTARSAPAHERAIRTLMAWGIDVDEAMFLGGLSKSEFLR 265
Query: 482 EYQDEFMFDDGAG 520
EY+ +F FDD G
Sbjct: 266 EYEPDFFFDDQTG 278
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 37.9 bits (84), Expect = 0.16
Identities = 37/127 (29%), Positives = 54/127 (42%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLDLLDRM 211
V IDEAHML E F+ L + LE V + +I T +L R
Sbjct: 122 VYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPT-----------ILSRC 170
Query: 212 IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAK 391
+ + +++ E L CE+E + AL VL A+E +R A L+ AS+ +
Sbjct: 171 QRIIFSKVRKEKVIEYLKKICEKEGIECEEGALEVLAH-ASEGCMRDAASLLDQASVYGE 229
Query: 392 RRKATEV 412
R EV
Sbjct: 230 GRVTKEV 236
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 37.5 bits (83), Expect = 0.22
Identities = 38/150 (25%), Positives = 67/150 (44%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLDLLDRM 211
V IDE HML I F+ L + LE V + + ++ T H + L L
Sbjct: 119 VYIIDEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLFKL--- 175
Query: 212 IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAK 391
TT L EI ++ED + GD L ++ A+ S+R A+ L+ +++ K
Sbjct: 176 ----TTDQLFAHLVEI----AKKEDIEHDGDGLRLIAENAS-GSVRNALFLLEQSAIYTK 226
Query: 392 RRKATEVSMEDVKKVYSSFLDEHRSEQFLK 481
+ + + +V+ + +D+H +E +K
Sbjct: 227 NK----IHVSEVRALLGC-VDKHLTENLVK 251
>UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit;
n=44; Streptococcus|Rep: DNA polymerase III, gamma/tau
subunit - Streptococcus mutans
Length = 558
Score = 36.7 bits (81), Expect = 0.38
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE T VV I+AT T + H IP +L R
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILAT----TEL--------HKIPATILSR 168
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA-SLV 385
+ + ++E L ++E +AL+++ R A E +R A+ ++ A SL
Sbjct: 169 VQRFEFKAIKTKAIKEHLADILKKEGLSFDEEALSLIARRA-EGGMRDALSILDQALSLT 227
Query: 386 AKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQ 490
+ E++ E + LD++ ++ E Q
Sbjct: 228 NDNDVSLEIAEEITGSISLRALDQYVADLLAHETQ 262
>UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Mycoplasma mobile|Rep: DNA polymerase III subunit
gamma and tau - Mycoplasma mobile
Length = 720
Score = 36.3 bits (80), Expect = 0.50
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETA-PVVIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDEAHML F+ L + LE + I+AT P IPL ++ R
Sbjct: 119 VYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATT------------DPQKIPLTVISR 166
Query: 209 M----IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ T P ++L+E+L +E+ +++ +ALT++ ++A E LR A+ +
Sbjct: 167 VQRFNFKRITLPILEKQLQEVLT----KENIRINKNALTLIAKMA-EGGLRDALSIADQI 221
Query: 377 SLVAKRRKATEVSMEDVKKVYS 442
S+ + TE +++V + S
Sbjct: 222 SIFS-NNNITEKEVDEVFSLVS 242
>UniRef50_Q0IMR9 Cluster: Os12g0550700 protein; n=3; Oryza sativa
(japonica cultivar-group)|Rep: Os12g0550700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 1228
Score = 35.9 bits (79), Expect = 0.66
Identities = 29/102 (28%), Positives = 46/102 (45%)
Frame = +2
Query: 245 ELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAKRRKATEVSMED 424
E LN E + ++ D L + + + ++R A +LI + S VAK TE M
Sbjct: 1121 ERSSCLNTANELKTVKLVADLLILTVKHGSRDAIRDAKELIESLSEVAKEISDTENFM-- 1178
Query: 425 VKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGDAPQMMEVTQ 550
V + D + F+KE +D+ + G D P+M V Q
Sbjct: 1179 ---VIAGGSDPKTLDSFVKEAEDQLLRRVGREDTPEMAVVIQ 1217
>UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1;
Nitrosococcus oceani ATCC 19707|Rep: DNA-directed DNA
polymerase - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 529
Score = 35.5 bits (78), Expect = 0.87
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HM F+ L + LE + ++AT P +P+ +L R
Sbjct: 122 VYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATT------------EPKKLPVTVLSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ T + + E LN E E+ ALT++ R A E S+R A+ L+ A
Sbjct: 170 CLQFNLRRITPKAIAEHLNSILEAEEIPSESYALTLIAR-AAEGSVRDALSLLDQA 224
>UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Eubacterium ventriosum ATCC 27560
Length = 541
Score = 35.5 bits (78), Expect = 0.87
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML I F+ L + LE A V+ I+AT PH IP+ +L R
Sbjct: 137 VYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATT------------EPHKIPITILSR 184
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ + L+ E+E ++ A+ + + A + S+R A+ L+
Sbjct: 185 CQRYDFKRISIDTIAARLSELMEKESIEVEDKAIRYVAK-AADGSMRDALSLLDQCIAFY 243
Query: 389 KRRKATEVSMEDV 427
+K T ++ DV
Sbjct: 244 LGQKLTYDNVLDV 256
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 35.1 bits (77), Expect = 1.2
Identities = 35/139 (25%), Positives = 63/139 (45%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLDLLDRM 211
+ IDE HML + F+ L + LE P + T I+ IP+ ++ R
Sbjct: 125 IFIIDEVHMLSKQAFNALLKTLEE---PPEYLKFIFATTEIK--------KIPITVVSRC 173
Query: 212 IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAK 391
+ EL + + E+E+ S DAL ++ ++ +E S+R A+ L+ A L
Sbjct: 174 QRFDLSRIKSLELFDFIRKIKEKENGNASDDALKLIVKI-SEGSVRDALSLLDRALLTLD 232
Query: 392 RRKATEVSMEDVKKVYSSF 448
+ K E+ + +K++ F
Sbjct: 233 KDK--ELDLAAAQKIFGYF 249
>UniRef50_P47658 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Mycoplasma genitalium|Rep: DNA polymerase III subunit
gamma/tau - Mycoplasma genitalium
Length = 597
Score = 35.1 bits (77), Expect = 1.2
Identities = 38/150 (25%), Positives = 66/150 (44%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLDLLDRM 211
V +DEAHML + + L + LE V+ + T + IPL +L R
Sbjct: 121 VYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNK-----------IPLTILSRC 169
Query: 212 IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAK 391
T + E LN ++E ++ DAL + + ++ SLR + L+ S +
Sbjct: 170 QSFFFKKITSDLILERLNDIAKKEKIKIEKDALIKIADL-SQGSLRDGLSLLDQISNFSD 228
Query: 392 RRKATEVSMEDVKKVYSSFLDEHRSEQFLK 481
K +S+ DV+K + + +D + F+K
Sbjct: 229 SEK---ISITDVEKTF-NIVDRNAKFTFIK 254
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 34.7 bits (76), Expect = 1.5
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
+ IDE HML F+ L + LE A VV IMAT T + H IP +L R
Sbjct: 138 IYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMAT----TEV--------HKIPQTILSR 185
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTR 325
+ + + E L + C+ E +AL V+ R
Sbjct: 186 CQRFDFRRISTRSITERLKLICDREGVTADDEALWVVAR 224
>UniRef50_Q2AEL1 Cluster: Regulatory protein GntR, HTH; n=1;
Halothermothrix orenii H 168|Rep: Regulatory protein
GntR, HTH - Halothermothrix orenii H 168
Length = 321
Score = 34.7 bits (76), Expect = 1.5
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Frame = +2
Query: 197 LLDRMIIVPTTPYTHQELREILNIRCEE---EDCQMSGDALTVLTRVATETSLRYAIQLI 367
+LDR+ ++ TTP+ QE+ E ++ +E + + D + L R+ +S I LI
Sbjct: 176 ILDRVEMIVTTPFHLQEVEEFVSGMDKEVIDMNLEPKMDTIVKLARIKPGSS----IGLI 231
Query: 368 TTASLVAK--RRKATEVSMEDVKKVYSSFLDEHRSEQFLKEY 487
+ A+ R T+ S+ + K Y++ D+ E+F+ Y
Sbjct: 232 CLSDYFAREVERSLTKTSLNNFKLNYTTTEDKEELEEFIARY 273
>UniRef50_A1SFG3 Cluster: AAA ATPase, central domain protein; n=1;
Nocardioides sp. JS614|Rep: AAA ATPase, central domain
protein - Nocardioides sp. (strain BAA-499 / JS614)
Length = 583
Score = 34.7 bits (76), Expect = 1.5
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +2
Query: 140 GITRIRGTNYRSPHGIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDAL--T 313
G T I TN +P I LDR ++P P + EL +++ I + + GD +
Sbjct: 404 GFTVIASTNVPAPRFIDSAALDRFEVIPVLPASTSELVDVVRINARQTQVPL-GDGIQSA 462
Query: 314 VLTRVAT--ETSLRYAIQLITTASLVAKRRKATEVSMEDVKKV 436
+ +A S R A +++ A A R + +V +D+ V
Sbjct: 463 IHDYMANGRVISNRTATEVVADAHFAAISRGSEKVEGQDITHV 505
>UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas
salina|Rep: DNA polymerase III - Rhodomonas salina
(Cryptomonas salina)
Length = 370
Score = 34.7 bits (76), Expect = 1.5
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLD-LLDR 208
V IDEAHML I F+ L + LES V + + + +I T + + D
Sbjct: 123 VCIIDEAHMLSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIRDH 182
Query: 209 MIIVPTTPYTHQELREILN 265
+I+ T + E I N
Sbjct: 183 DLIIGITKVVYNEKLRITN 201
>UniRef50_Q8EWC6 Cluster: Holliday junction DNA helicase; n=1;
Mycoplasma penetrans|Rep: Holliday junction DNA helicase
- Mycoplasma penetrans
Length = 322
Score = 34.3 bits (75), Expect = 2.0
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVI-MATNRGITRIRGTNY------RSPHGIP 190
++FIDE H ++ +CF L A+E + I N+ +T + + +P
Sbjct: 92 IIFIDEVHSINPKCFELLYSAMEDFEINIEIGKDFNKKLTTVSIPKFTLIGATTKLGNLP 151
Query: 191 LDLLDRM-IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLT-------RVATETSL 346
+R I++ + YT +E+ +IL+ ++ D ++ L +++ R+A
Sbjct: 152 APFEERFGIVINISEYTEKEIYKILDFSLKQCDIKVDKKVLEIISHRSKGIPRIAKRILA 211
Query: 347 RYAIQLIT---TASLVAKRRKATEVSMEDVKKVY 439
RY +T TA + K E + ++ Y
Sbjct: 212 RYLDHSLTSNNTAETILKNIGVYEKGLNEIDLSY 245
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 34.3 bits (75), Expect = 2.0
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
+ IDE HML F+ L + LE A V I AT T IR +P+ +L R
Sbjct: 141 IYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFAT----TEIR--------KVPVTVLSR 188
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ + ++L E +++ DAL ++TR A E S R A L+ A
Sbjct: 189 CQRFDLRRIEPEVMIDLLRRIATSEQAEIADDALALITR-AAEGSARDATSLLDQA 243
>UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Clostridiales|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium phytofermentans
ISDg
Length = 522
Score = 34.3 bits (75), Expect = 2.0
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE + V+ I+AT T + H IP+ +L R
Sbjct: 122 VYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILAT----TEV--------HKIPITILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLI 367
T E+ + L + E+E + AL + R A + S R A+ L+
Sbjct: 170 CQRYDFRRVTIDEITKRLRVITEKEGIEAEEKALRYVAR-AADGSFRDALSLL 221
>UniRef50_Q2M075 Cluster: GA10596-PA; n=1; Drosophila
pseudoobscura|Rep: GA10596-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1738
Score = 34.3 bits (75), Expect = 2.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 223 GDYDHPVEQVKGYPMGAPVVRAPDPSYAPVRGHYDHGGGLRFES 92
G H + + +G P P++ P PSYAP GGG +ES
Sbjct: 1460 GPPPHVMNKREGKPNQLPLISGPPPSYAPPSNPGGSGGGSSYES 1503
>UniRef50_Q0UIK1 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1149
Score = 34.3 bits (75), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 337 NLTPVRHPADHHSVPRRQEEESHRGKYGRCEESLLVVPRRA 459
N+TP RH DH + PRRQ ++ + ++ + V PR+A
Sbjct: 372 NITP-RHSQDHINAPRRQSQDQIHAPRRQSQDQISVAPRQA 411
>UniRef50_P29569 Cluster: Cell division control protein 6 homolog;
n=2; Methanothermobacter thermautotrophicus|Rep: Cell
division control protein 6 homolog - Methanobacterium
thermoformicicum
Length = 364
Score = 34.3 bits (75), Expect = 2.0
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 230 PYTHQELREILNIRCEE--EDCQMSGDALTVLTRVATETS--LRYAIQLITTASLVAKRR 397
PY+ +L EILN R E D + D + + +A + + RYA+ L++ A+ +A R+
Sbjct: 183 PYSAPQLEEILNYRVEMAFNDGVLEDDVVPLCAALAAQRNGDARYALDLLSFAADIAIRQ 242
Query: 398 KATEVSMEDVK 430
VS DV+
Sbjct: 243 LKGVVSESDVR 253
>UniRef50_Q5QWS2 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Idiomarina loihiensis|Rep: DNA polymerase III,
gamma/tau subunits - Idiomarina loihiensis
Length = 681
Score = 33.9 bits (74), Expect = 2.7
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE V ++AT P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT------------DPQKLPVTILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA---- 376
+ ++ ++ + L+ +E Q +AL +L R A S+R A+ L A
Sbjct: 170 CLQFNLKALSNDDITQQLSYVLSQEQVQADSEALPLLARSA-RGSMRDALSLTDQAIAQG 228
Query: 377 ----SLVAKRRKATEVSMEDVKKVYSSFLD 454
S+ + RR V + D+ + S L+
Sbjct: 229 GGSVSIDSVRRMLGNVPVADIAALLESVLE 258
>UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n=2;
Clostridium difficile|Rep: DNA polymerase III subunit
gamma/tau - Clostridium difficile (strain 630)
Length = 545
Score = 33.9 bits (74), Expect = 2.7
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE + V+ I+AT PH IP +L R
Sbjct: 121 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATT------------EPHKIPATILSR 168
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLI 367
T +++ + CE+E + AL ++ R ++ +LR A+ ++
Sbjct: 169 CQRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIAR-NSQGALRDALSIL 220
>UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and
tau; n=10; Lactobacillales|Rep: DNA polymerase III,
subunits gamma and tau - Lactobacillus reuteri
Length = 611
Score = 33.9 bits (74), Expect = 2.7
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 1/172 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE A V+ I+AT PH IPL ++ R
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATT------------EPHKIPLTIISR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ + ++ + ++++ AL V+ A E +R A+ ++ +
Sbjct: 170 VQRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIAN-AAEGGMRDALSILDQVLSFS 228
Query: 389 KRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGDAPQMMEV 544
EV ++D V S ++Q LK+Y E +GA M ++
Sbjct: 229 D----NEVKLDDALLVTGSV-----TKQLLKKYFLEISKHEGATALDTMKDI 271
>UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TAU;
n=1; Mycoplasma agalactiae|Rep: DNA polymerase III
subunit gamma and TAU - Mycoplasma agalactiae
Length = 614
Score = 33.9 bits (74), Expect = 2.7
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
+ IDE HML F+ L + LE A V+ I AT P IPL +L R
Sbjct: 120 IYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATT------------DPQKIPLTILSR 167
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTAS 379
+ ++ L + + E+E + +AL + R+A S+R A+ +I A+
Sbjct: 168 VQRFNFRRMSNDTLVKQIKSILEQEGIKYDAEALPYIARLAV-GSMRDALSIIDQAN 223
>UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subunits;
n=17; Bacilli|Rep: DNA polymerase III gamma and tau
subunits - Staphylococcus haemolyticus (strain JCSC1435)
Length = 571
Score = 33.5 bits (73), Expect = 3.5
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETA-PVVIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE A + I+AT PH IP ++ R
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT------------EPHKIPPTIISR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+++ + L EE+ +AL + + A+E +R A+ ++ A
Sbjct: 170 AQRFDFKAIGTEQITDRLRFVAEEQQLDYDNEALEFIAK-ASEGGMRDALSIMDQAIAFG 228
Query: 389 KRRKATEVSMEDVKKVYSSFLDE 457
+ +++ V + L+E
Sbjct: 229 DEHLTLQDALDVTGSVDEAALNE 251
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 33.5 bits (73), Expect = 3.5
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML E F+ L + LE +V I+AT TN P IP ++ R
Sbjct: 120 VYIIDEVHMLTREAFNALLKTLEEPPQHIVFILAT---------TN---PEKIPPTIMSR 167
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLI 367
++ + + + L CE+E ++ +AL + + A E LR A+ +
Sbjct: 168 CHVLEFRNISEENIISKLKSVCEKEGFDVTYEALKKIAKRA-EGGLRDALSTL 219
>UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; candidate division TM7 genomosp. GTL1|Rep: DNA
polymerase III, subunits gamma and tau - candidate
division TM7 genomosp. GTL1
Length = 454
Score = 33.5 bits (73), Expect = 3.5
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML E F+ L + LE A VV I+AT H +P ++ R
Sbjct: 107 VYIIDEVHMLTGESFNALLKTLEEPPAHVVFILATTEA------------HKLPATIVSR 154
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
E+ + L+ E+E+ ++ DAL ++ E S R +I L+ VA
Sbjct: 155 TQRFHFRLIPEAEVAKHLSHIAEQENIKIDEDALELIAEHG-EGSFRDSISLLDQLGSVA 213
Query: 389 KRRKATEVSME 421
T +E
Sbjct: 214 GDEHVTAKMIE 224
>UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III subunits gamma and tau - Parvularcula
bermudensis HTCC2503
Length = 607
Score = 33.5 bits (73), Expect = 3.5
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE A V I AT T IR +P+ +L R
Sbjct: 137 VYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFAT----TEIR--------KVPVTVLSR 184
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ L L E+E+ +S +AL ++ + A E S+R A+ L+ A LV
Sbjct: 185 CQRFDLRRFDITSLSAHLAGIAEKEEAAISKEALDMIAQ-AAEGSVRDALSLLDQA-LVQ 242
Query: 389 KRRKA 403
K +A
Sbjct: 243 KAGEA 247
>UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains;
n=4; Neisseria|Rep: DNA polymerase III tau and gamma
chains - Neisseria meningitidis serogroup A
Length = 709
Score = 33.5 bits (73), Expect = 3.5
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 1/143 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ + + LE V I+AT PH +P+ +L R
Sbjct: 122 VYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT------------DPHKVPVTVLSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ T Q++ L + E AL +L R A S+R A+ L+ A +
Sbjct: 170 CLQFVLRNMTAQQVARHLAYVLDSEKIAYDPPALQLLGRAAA-GSMRDALSLLDQAIALG 228
Query: 389 KRRKATEVSMEDVKKVYSSFLDE 457
+ A + + V +L E
Sbjct: 229 SGKVAENDVRQMIGAVDKQYLYE 251
>UniRef50_A2F1F9 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 489
Score = 33.5 bits (73), Expect = 3.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +2
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRS------EQFLKEYQDEFMFDDGAGD 523
++ ASL + + E + K+YS L H ++FLK+Y+ F G D
Sbjct: 36 IVILASLTYPWISSRNAAKESIAKIYSEHLTAHTEAITAGIQEFLKQYEVPSRFLAGISD 95
Query: 524 APQMMEVTQ 550
P ++E +Q
Sbjct: 96 TPDLIECSQ 104
>UniRef50_UPI00015B4E0D Cluster: PREDICTED: similar to
ENSANGP00000028549; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000028549 - Nasonia
vitripennis
Length = 480
Score = 33.1 bits (72), Expect = 4.7
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 251 REILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLV-AKRRKATEVSMEDV 427
++ + IRC+ E +M +VL + + + + + T+ L KR +A + + D+
Sbjct: 4 KQKIKIRCKWEKTEMLKAINSVLEKRLSMRAASHVYNVPTSTLLAWCKRARARNIKLSDI 63
Query: 428 KKVYSSFLDEHRSEQFLKEYQDE 496
K+ Y + + E LK+Y E
Sbjct: 64 KRGYFQNVFTEQQENQLKQYVKE 86
>UniRef50_UPI000045BE3B Cluster: hypothetical protein Npun02005056;
n=1; Nostoc punctiforme PCC 73102|Rep: hypothetical
protein Npun02005056 - Nostoc punctiforme PCC 73102
Length = 118
Score = 33.1 bits (72), Expect = 4.7
Identities = 19/83 (22%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 281 EDCQMSGDALTVLTRVATETSLRYAIQ--LITTASLVAKRRKATEVSMEDVKKVYSSFLD 454
E+ Q+ ++T++ + E S++Y + L T + + + ++++E++KKV ++F+D
Sbjct: 3 ENIQLFFTSITIILQDIKELSVKYKNEPRLGLTEIIKIAQSQGYDLNIEELKKVITTFMD 62
Query: 455 EHRSEQFLKEYQDEFMFDDGAGD 523
+ E KEY+ + + +G +
Sbjct: 63 FKKEELKNKEYKTKTITLEGCSN 85
>UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits;
n=1; Ureaplasma parvum|Rep: DNA polymerase III gamma-tau
subunits - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 597
Score = 33.1 bits (72), Expect = 4.7
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDEAHML ++ L + +E V+ I AT T Y+ IPL ++ R
Sbjct: 122 VYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFAT---------TEYQK---IPLTIISR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ EL+E+++ +ED ++ +A+ L ++A + S R + ++ + V
Sbjct: 170 CQRYDFKRLNNSELQELIDSILTKEDIKIDNNAIDKLIQLA-DGSGRDCLSILDQLTTVK 228
Query: 389 K 391
K
Sbjct: 229 K 229
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 33.1 bits (72), Expect = 4.7
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
+ IDE HML F+ L + LE + V+ I+AT PH IP +L R
Sbjct: 122 IYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATT------------EPHKIPATILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLI 367
P ++ + L CE+ + +AL ++ + ++ +LR A+ ++
Sbjct: 170 CQRFDFKPVRINDIMKRLESICEDIGIKTEEEALRLIA-LNSDGALRDALSIL 221
>UniRef50_Q0HHZ2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Shewanella|Rep: DNA polymerase III, subunits
gamma and tau - Shewanella sp. (strain MR-4)
Length = 1071
Score = 33.1 bits (72), Expect = 4.7
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE V ++AT P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT------------DPQKLPVTVLSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ T QE+ L +E +ALT+L + A S+R A+ L A
Sbjct: 170 CLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAK-AANGSMRDALSLTDQA 224
>UniRef50_A1RIP8 Cluster: DNA polymerase III, subunits gamma and
tau; n=5; Shewanella|Rep: DNA polymerase III, subunits
gamma and tau - Shewanella sp. (strain W3-18-1)
Length = 984
Score = 33.1 bits (72), Expect = 4.7
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE V ++AT P +P+ +L R
Sbjct: 149 VYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT------------DPQKLPVTVLSR 196
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ T E+ LN +E +ALT+L + A S+R A+ L A
Sbjct: 197 CLQFNLKSLTQDEIGTQLNHILTQEQLPFEVEALTLLAK-AANGSMRDALSLTDQA 251
>UniRef50_A0KY06 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Shewanella sp. ANA-3|Rep: DNA polymerase III,
subunits gamma and tau - Shewanella sp. (strain ANA-3)
Length = 1040
Score = 33.1 bits (72), Expect = 4.7
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE V ++AT P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATT------------DPQKLPVTVLSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ T QE+ L +E +ALT+L + A S+R A+ L A
Sbjct: 170 CLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAK-AANGSMRDALSLTDQA 224
>UniRef50_Q38BI3 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 2539
Score = 33.1 bits (72), Expect = 4.7
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Frame = +2
Query: 242 QELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAKRRKATEVSME 421
Q LR+ ++I +G+ R+ + L+ A+QL+ + L K AT+ ++
Sbjct: 636 QRLRDRVDIIAASRVADENGEGAADTLRLREQ--LQSALQLLEQSELTIKDNAATQTTLR 693
Query: 422 DVKKVYSS----FLDEHRSEQFLKEYQDEFMFDDGAGDAPQMMEVTQ 550
+ ++ LDE +++ + + +FDD D+PQ++E +
Sbjct: 694 EQLAATTAERDMLLDER--DKYRSAFFEGLVFDDTVEDSPQILETKE 738
>UniRef50_Q6ML73 Cluster: ATP-dependent protease LA; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent protease
LA - Bdellovibrio bacteriovorus
Length = 793
Score = 32.7 bits (71), Expect = 6.2
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Frame = +2
Query: 173 SPHGIPLDLLDRMIIVPTTPYTHQELREILNIR----------CEEEDCQMSGDALT-VL 319
S GIPL LLDRM ++ + YT E R+I EE Q++ ALT +L
Sbjct: 472 SLEGIPLPLLDRMEVIDLSGYTVDEKRQIARSHLWPKQLKEHGLEENQLQITDQALTKLL 531
Query: 320 TRVATETSLR 349
T E +R
Sbjct: 532 THYTREAGVR 541
>UniRef50_Q0LFU1 Cluster: ATP-binding region, ATPase-like precursor;
n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
ATP-binding region, ATPase-like precursor -
Herpetosiphon aurantiacus ATCC 23779
Length = 850
Score = 32.7 bits (71), Expect = 6.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 143 ITRIRGTNYRSPHGIPLDLLDRMIIVPTTPYTHQELREIL-NIRCEEEDCQMSGDALTVL 319
+TR+R N G+ ++L ++ VPT ELRE+L N+ D +G L V
Sbjct: 568 LTRVRWRNAAQEQGVNIELQREILNVPTIRGHAAELREVLTNLIINAVDAMPNGGMLRVA 627
Query: 320 T 322
T
Sbjct: 628 T 628
>UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella
tularensis|Rep: DNA polymerase III - Francisella
tularensis subsp. novicida GA99-3549
Length = 546
Score = 32.7 bits (71), Expect = 6.2
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML + F+ L + LE V I+AT T+Y H IP+ +L R
Sbjct: 122 VYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT---------TDY---HKIPVTILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
I + + ++++ L I +E+ +L + A + SLR A+ L+ A
Sbjct: 170 CIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQA 224
>UniRef50_A4WS41 Cluster: Mu-like prophage major head subunit
gpT-like protein; n=3; Alphaproteobacteria|Rep: Mu-like
prophage major head subunit gpT-like protein -
Rhodobacter sphaeroides ATCC 17025
Length = 298
Score = 32.7 bits (71), Expect = 6.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 122 IMATNRGITRIRGTNYRSPHGIPLDLLDRMIIVPTTPYTHQELREILN 265
+ A N G R T + HG PL L+ +++VP P R+ILN
Sbjct: 228 LSAANYGTARAALTGMKGDHGRPLGLMPNLLVVP--PSLESAARKILN 273
>UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau;
n=3; Lactococcus lactis|Rep: DNA polymerase III subunits
gamma / tau - Lactococcus lactis subsp. cremoris (strain
MG1363)
Length = 553
Score = 32.7 bits (71), Expect = 6.2
Identities = 30/115 (26%), Positives = 47/115 (40%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLDLLDRM 211
V IDE HML F+ L + LE T VV + + + IP ++ R+
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQK-----------IPATIISRV 170
Query: 212 IIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
T ++R L +E + AL V+ + A E +R A+ L+ A
Sbjct: 171 QRFAFKSITTADIRTYLGKILGDEGVEFEDKALDVIAK-AAEGGMRDALSLLDQA 224
>UniRef50_Q9VKC2 Cluster: CG12317-PA, isoform A; n=4; Diptera|Rep:
CG12317-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 500
Score = 32.7 bits (71), Expect = 6.2
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 228 VVGTMIILSSRSRGIPWGLR*FVPLILVMPLFVAIMTTGAVS 103
VV +LSS + + +G R F PL ++P+FVA+ T G V+
Sbjct: 287 VVNKPEMLSSLAVAVTFGNRVFGPLAFMVPIFVALSTFGGVN 328
>UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau;
n=16; Bacillaceae|Rep: DNA polymerase III subunit
gamma/tau - Bacillus subtilis
Length = 563
Score = 32.7 bits (71), Expect = 6.2
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAP-VVIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML I F+ L + LE + I+AT PH IPL ++ R
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATT------------EPHKIPLTIISR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
T Q + +N + E Q+ +L ++ A +R A+ L+ A
Sbjct: 170 CQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIAS-AAHGGMRDALSLLDQA 224
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 32.3 bits (70), Expect = 8.1
Identities = 39/164 (23%), Positives = 69/164 (42%)
Frame = +2
Query: 17 EMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLD 196
E + V IDEAHML E F+ L + LE A V+ + + +I T
Sbjct: 123 EGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPT----------- 171
Query: 197 LLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
++ R P +E++ L +EE+ M+ D +V+ + S+R +I ++
Sbjct: 172 IISRCQRYDFKPLDLKEMKAGLEHILKEENLSMTDDVYSVIYE-NSSGSMRDSISILERL 230
Query: 377 SLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFD 508
+ A ++ ED + S R + FL + +E +D
Sbjct: 231 IVTANGKEIDLKIAEDTLGITPS----SRIKIFLNKILNENEYD 270
>UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and tau;
n=12; Vibrionales|Rep: DNA polymerase III subunits gamma
and tau - Photobacterium profundum 3TCK
Length = 759
Score = 32.3 bits (70), Expect = 8.1
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE V I+AT P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATT------------DPQKLPVTILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ + +++ L+ +E+ AL++L+R A E S+R A+ L A +
Sbjct: 170 CLQFHLKHLDNNQIQSQLSNVLTQENVDFEPKALSLLSR-AAEGSMRDALSLTDQAIALG 228
Query: 389 KRR-KATEVSM 418
+ A VSM
Sbjct: 229 NGQVHADSVSM 239
>UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Lawsonia intracellularis PHE/MN1-00|Rep: DNA
polymerase III, gamma/tau subunits - Lawsonia
intracellularis (strain PHE/MN1-00)
Length = 574
Score = 32.3 bits (70), Expect = 8.1
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGIPLDLLDRM 211
V IDEAHML E F+ L + LE E P T + T PH P+ ++ R
Sbjct: 122 VFIIDEAHMLTRESFNALLKTLE-EPPPF--------STFVFATT--EPHKFPVTIISRC 170
Query: 212 IIVPTTPYTHQEL-REILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
P T +EL ++++ +E C +A+ ++ R A+ S+R ++ L+ +
Sbjct: 171 QHFVLKPLTKEELIYNLIHVLKQENIC-YEDNAIQLIARRAS-GSIRDSMSLLGQTLMF- 227
Query: 389 KRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDE 496
+ + E+V + ++ E+ L+ ++D+
Sbjct: 228 ----SNGILTENVVRNVLGLAEQEFYEKLLRAFKDQ 259
>UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Psychrobacter|Rep: DNA polymerase III,
subunits gamma and tau - Psychrobacter sp. PRwf-1
Length = 751
Score = 32.3 bits (70), Expect = 8.1
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE A V ++AT P +P+ ++ R
Sbjct: 124 VYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATT------------DPQKLPITIISR 171
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
+ P Q L + + +E+ + AL L A + S+R A+ L T ++
Sbjct: 172 CLQFVLRPLPQQALSDHIANLLTQENIDFTQPALWQLAN-AAKGSVRDALSL-TDQAIAF 229
Query: 389 KRRKATEVSMEDV 427
+ + T+ ++ D+
Sbjct: 230 GQGRLTDETVNDM 242
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 32.3 bits (70), Expect = 8.1
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETA-PVVIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML E F+ L + LE V+I+AT PH +PL +L R
Sbjct: 122 VYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATT------------EPHRVPLTILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
++ + L ++ +AL ++ R A E LR A+ ++ A+
Sbjct: 170 CQRFDFRRIIPADIIKRLKEVAAGARLEVEEEALRLIAR-AAEGGLRDALSILDQAAAFG 228
Query: 389 KRRKATEVSMEDV 427
K TE + +
Sbjct: 229 -GMKVTEAGVHQI 240
>UniRef50_A0LKQ5 Cluster: AAA ATPase, central domain protein; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: AAA ATPase,
central domain protein - Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB)
Length = 419
Score = 32.3 bits (70), Expect = 8.1
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Frame = +2
Query: 26 PGVLFIDE----AHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIP 190
P +LFIDE A D + + RA+ + V + G+ + TNY P +
Sbjct: 265 PCILFIDEFDFVAKTRDSDDHGAMKRAVNTLLKAVDEVSLVEDGVLLVAATNY--PQLLD 322
Query: 191 LDLLDRMIIVPTTPYTHQELRE-ILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLI 367
R V + +++R IL + D + DAL LT + + LR ++
Sbjct: 323 HAAWRRFDKVLSFTLPDEDMRSRILAMVLRRMDASVDADALARLTAGYSGSDLRLVVREA 382
Query: 368 TTASLVAKRRKATEVSMEDVKKVYSSFLDEHRS 466
+L+ R+K + + + +D+HR+
Sbjct: 383 VLNALLEDRKKIDQKDLLRAVAQFQRRMDDHRA 415
>UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC
2.7.7.7) [Contains: DNA polymerase III subunit gamma];
n=39; Enterobacteriaceae|Rep: DNA polymerase III subunit
tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit
gamma] - Salmonella typhimurium
Length = 642
Score = 32.3 bits (70), Expect = 8.1
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPV-VIMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V IDE HML F+ L + LE A V ++AT P +P+ +L R
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATT------------DPQKLPVTILSR 169
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTA 376
+ +++R L EE AL +L+R A + SLR A+ L A
Sbjct: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSR-AADGSLRDALSLTDQA 224
>UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Mycoplasma pneumoniae|Rep: DNA polymerase III subunit
gamma/tau - Mycoplasma pneumoniae
Length = 681
Score = 32.3 bits (70), Expect = 8.1
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Frame = +2
Query: 32 VLFIDEAHMLDIECFSFLNRALESETAPVV-IMATNRGITRIRGTNYRSPHGIPLDLLDR 208
V +DEAHML + +S L + LE V+ I AT T + IP+ +L R
Sbjct: 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFAT---------TEFNK---IPITILSR 167
Query: 209 MIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVA 388
T+ +++ L +E +++ DAL L +A + SLR + L+ S +
Sbjct: 168 CQSFFFKQITNDLIQQRLAEVAAKESIKITTDALVKLADLA-QGSLRDGLSLLDQISNFS 226
Query: 389 KRRKATEVSMEDVKKVYSSFLDEHRSEQFLK 481
+ + +S+ DV+K + + LD+ + F++
Sbjct: 227 ESK---TISLADVEKTF-NLLDKEQKFGFIE 253
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,207,505
Number of Sequences: 1657284
Number of extensions: 11572463
Number of successful extensions: 35168
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 33816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35133
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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