Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I08
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 229 2e-61
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 171 5e-44
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 31 0.16
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 29 0.48
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 27 2.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 2.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 5.9
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 229 bits (561), Expect = 2e-61
Identities = 101/169 (59%), Positives = 136/169 (80%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EGKAE++PGVLF+DE HMLDIECFSF NRALE + AP+VIMA+NRGITRIRGTNYRSPHG
Sbjct: 280 EGKAEIVPGVLFVDEVHMLDIECFSFFNRALEDDLAPIVIMASNRGITRIRGTNYRSPHG 339
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP+DLLDRM+I+ T PY+H+E++EIL IRC+EED M AL L+ + ETSLRYA+ L
Sbjct: 340 IPVDLLDRMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSLRYALLL 399
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDD 511
I++++ VA +RK+ + D+++VY FLD+ RS ++L+EY ++ ++
Sbjct: 400 ISSSNQVALKRKSATIEESDIRRVYELFLDQKRSVEYLEEYGKNYITEN 448
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 171 bits (417), Expect = 5e-44
Identities = 82/160 (51%), Positives = 114/160 (71%), Gaps = 1/160 (0%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGT-NYRSPH 181
+G AE+IPGVLFIDE HMLDIECF++LN+ALES +P+VI A+NRGI IRGT + ++PH
Sbjct: 290 QGIAELIPGVLFIDEVHMLDIECFTYLNQALESTISPIVIFASNRGICTIRGTEDIQAPH 349
Query: 182 GIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQ 361
GIP DLLDR++IV T PY+ E+R IL IR + E+ ++ + L L + + TSLRY IQ
Sbjct: 350 GIPTDLLDRLLIVRTLPYSESEIRSILQIRAKVENIILTDECLDKLAQEGSRTSLRYVIQ 409
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLK 481
L+T S++A E+ ++D+++ FLD RS Q +K
Sbjct: 410 LLTPVSIIASLHGNKEIGVQDIEECNDLFLDARRSAQVVK 449
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 30.7 bits (66), Expect = 0.16
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 218 VPTTPYTHQELREILNIRCE--EEDCQMSGDALTVLTR--VATETSLRYAIQLITTASLV 385
VP PYTH +L I+ R E +D S DA+ R A R A+ + AS +
Sbjct: 510 VPFEPYTHTQLEIIIAARLEAVRDDDVFSSDAIRFAARKVAAVSGDARRALDICRRASEL 569
Query: 386 AKRR 397
A+ +
Sbjct: 570 AENK 573
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 29.1 bits (62), Expect = 0.48
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 424 IFHTYLCGFPPLGDE 380
+ HT LCGFPP DE
Sbjct: 282 VLHTMLCGFPPFFDE 296
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 413 SMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFD 508
S+ D+KKVY ++ + ++ Y DEF FD
Sbjct: 4657 SILDIKKVYYDTKEDGTMDLKIQPYIDEFAFD 4688
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 424 IFHTYLCGFPPLGDE 380
+ +T LCGFPP DE
Sbjct: 352 VLYTILCGFPPFYDE 366
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 2.5
Identities = 28/94 (29%), Positives = 41/94 (43%)
Frame = +2
Query: 176 PHGIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYA 355
P I L L D + +T +EL + RCEE QMS D A+ R
Sbjct: 1041 PREISLLLDDPTLFYNNAAWTSKELYK----RCEEIISQMSLDERNTPKHTASTKRKRQP 1096
Query: 356 IQLITTASLVAKRRKATEVSMEDVKKVYSSFLDE 457
I+ +TT +L + +EV+ D + S+ DE
Sbjct: 1097 IRRVTT-NLTSDVPSGSEVA--DTNSLSSTTKDE 1127
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 218 VPTTPYTHQELREILNIR---CEEEDCQMSGDALTVLTRVATETS 343
+P + Y+H ELR +L R C E Q+SG +L ++T S
Sbjct: 655 IPASDYSHLELRSLLLARIFQCFFELSQLSGMSLDDQELLSTTVS 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,184
Number of Sequences: 5004
Number of extensions: 41079
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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