Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I08
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0608 - 4399252-4399894,4401640-4402427 247 4e-66
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 181 4e-46
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 180 7e-46
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 178 2e-45
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234... 36 0.023
02_04_0509 - 23554609-23555241,23555371-23556318 30 1.5
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 29 2.0
09_02_0083 + 4081564-4081677,4081853-4082359 29 2.6
07_03_1743 - 29167078-29167290,29167389-29168159 29 3.4
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 4.5
08_01_0876 - 8598664-8599374 28 4.5
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 28 4.5
11_01_0404 + 3071412-3071464,3073572-3074970 28 6.0
10_08_0576 - 18888702-18890165 28 6.0
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 28 6.0
01_06_1778 - 39820552-39821991 28 6.0
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127... 27 7.9
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 247 bits (605), Expect = 4e-66
Identities = 110/174 (63%), Positives = 142/174 (81%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EGKAE++PGVLFIDE HMLDIECFSFLNRALE++ AP++++ATNRGIT IRGTNYRSPHG
Sbjct: 296 EGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHG 355
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP D LDR++I+ T PYT ++R+IL+IRC+EED +MS DA +LT++ ETSLRYAI L
Sbjct: 356 IPPDFLDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHL 415
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGDA 526
IT+A+L ++RK V MED+ +VY FLD RS Q+L EYQ ++MF++ G+A
Sbjct: 416 ITSAALACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVPGEA 469
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 181 bits (440), Expect = 4e-46
Identities = 87/170 (51%), Positives = 122/170 (71%), Gaps = 1/170 (0%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EGKAE++P DIECFSFLNRALE++ P++++ATNRGIT IRG NY+S HG
Sbjct: 189 EGKAEIVP-----------DIECFSFLNRALENDVTPILVIATNRGITSIRGINYQSLHG 237
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMS-GDALTVLTRVATETSLRYAIQ 361
IP D L+R++I+ T PYT ++ ++L+IRC+EED +MS A +LT++ ET+LRYAI
Sbjct: 238 IPPDFLNRLLIITTQPYTEDDIPKVLDIRCDEEDVEMSTAYAKVLLTKIGVETALRYAIH 297
Query: 362 LITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDD 511
LIT+A+L ++ V MED+ +VY FLD RS Q+L EYQ ++MF++
Sbjct: 298 LITSAALAWQKHMGKIVEMEDISRVYQLFLDVKRSAQYLMEYQSQYMFNE 347
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 180 bits (438), Expect = 7e-46
Identities = 84/166 (50%), Positives = 121/166 (72%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EG AE++PGVLFIDE HMLDIECFS+LNRALES +P+VI+ATNRGI +RGT+ SPHG
Sbjct: 289 EGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHG 348
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP+DLLDR++I+ T Y E+ +IL IR + E+ ++ ++L L + +TSLR+AIQL
Sbjct: 349 IPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQL 408
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFM 502
++ AS+VAK ++S D+++V +LD S + L+E Q+ ++
Sbjct: 409 LSPASVVAKANGREKISKADLEEVSGLYLDAKSSARLLQEQQERYI 454
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 178 bits (434), Expect = 2e-45
Identities = 84/166 (50%), Positives = 120/166 (72%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EG AE++PGVLFIDE HMLDIECFS+LNRALES +P+VI+ATNRGI +RGT+ SPHG
Sbjct: 229 EGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHG 288
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP+DLLDR++I+ T Y E+ +IL IR + E+ + ++L L + +TSLR+AIQL
Sbjct: 289 IPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIDIDEESLAFLGEIGQQTSLRHAIQL 348
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFM 502
++ AS+VAK ++S D+++V + +LD S + L+E Q ++
Sbjct: 349 LSPASVVAKANGREKISKADLEEVSALYLDAKSSARLLQEQQGRYI 394
>12_02_0706 + 22319293-22319803,22321625-22321766,22322223-22323451,
22323471-22323916,22324001-22324510
Length = 945
Score = 35.9 bits (79), Expect = 0.023
Identities = 29/102 (28%), Positives = 46/102 (45%)
Frame = +2
Query: 245 ELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAKRRKATEVSMED 424
E LN E + ++ D L + + + ++R A +LI + S VAK TE M
Sbjct: 838 ERSSCLNTANELKTVKLVADLLILTVKHGSRDAIRDAKELIESLSEVAKEISDTENFM-- 895
Query: 425 VKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGDAPQMMEVTQ 550
V + D + F+KE +D+ + G D P+M V Q
Sbjct: 896 ---VIAGGSDPKTLDSFVKEAEDQLLRRVGREDTPEMAVVIQ 934
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 239 HQELREILNIRCEEEDCQMSGDALTVLTRVATETSL 346
HQ+LR+ + + +DC M D L L R+ E +L
Sbjct: 267 HQQLRDAMAAQPHLDDCAMEEDLLDTLLRIQKEDNL 302
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 187 YPMGAPVVRAPDPSYAPVRGHYDHGGGLRFESPIQK*ETLDVQHVG 50
YP GA AP D GGG+R+ES +K L V +VG
Sbjct: 37 YPGGAAASAAPPSPPLATTCSDDWGGGMRWESARKKRVVLRVGYVG 82
>09_02_0083 + 4081564-4081677,4081853-4082359
Length = 206
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 233 YTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLV 385
+THQ I+ I C D M LTV+++V S+ Y L++ S +
Sbjct: 67 HTHQRRSLIVGILCVIFDTIMYSSPLTVMSQVVKTKSVEYMPLLLSVVSFL 117
>07_03_1743 - 29167078-29167290,29167389-29168159
Length = 327
Score = 28.7 bits (61), Expect = 3.4
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Frame = +2
Query: 182 GIPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQ 361
G DLLD +++ P TP+ Q+ + + + L +L R L ++
Sbjct: 192 GTAKDLLDALVVTPPTPFAEQDFLNMFFREQYKPIPNVYNLVLAMLWRHPENVDLD-QVK 250
Query: 362 LITTASLVAK----RRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGDAP 529
++ + +K K ++ ED+K + + D + E +Y++E +D A +A
Sbjct: 251 VVHYCAAGSKPWRFTGKEENMNREDIKMLVKRWWDIYNDESL--DYKEE---EDNADEAS 305
Query: 530 QMM 538
Q M
Sbjct: 306 QPM 308
>10_08_0253 -
16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 307 SVTRHLTVLLFAPYIKNLP*LLVGVRSGG 221
SVT H+ L A YIK P LL G S G
Sbjct: 910 SVTEHIVNLACAVYIKKYPVLLQGPTSSG 938
>08_01_0876 - 8598664-8599374
Length = 236
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 329 RRASEPSERHQTSDSPPLR---TLY*ESPVTP 243
RR P RH+TS SPP R L+ +P++P
Sbjct: 3 RRCHSPPPRHRTSSSPPHRCVEPLHRRAPLSP 34
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 139 GHN*DQGHELPEPPWDTP*PARQD 210
G DQ +LP PPW+T PA D
Sbjct: 501 GQGQDQSGDLPPPPWETQ-PAESD 523
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 307 SDGSDARRHGNLTPVRHPADHHSVPRRQEEESH 405
SDG +HG + H HHS +EE H
Sbjct: 109 SDGVQLGQHGKIAHHHHHHRHHSKNHGSDEEEH 141
>10_08_0576 - 18888702-18890165
Length = 487
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 361 ADHHSVPRRQEEESHRGKYGRCEESLLVVPR--RAQIGAVPQGV 486
A H V R EEE RG+ RCE LV R G VP GV
Sbjct: 192 AGEHKVVRLYEEEKERGQ-ERCEMYSLVSGGGWRPSAGRVPPGV 234
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 190 GYPMGAPVVRAPDPSYAPVRGHYDHGGGLRFESPIQ 83
GYP AP P + P R +D GG + SP+Q
Sbjct: 148 GYPPPHQHHMAPPPIHTPSRLSHDSPGGSPWRSPMQ 183
>01_06_1778 - 39820552-39821991
Length = 479
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 280 GGLSDVW*RSDGSDARRHGNLTPVRHPADHHSVPRRQEE-ESHRGKYGRCEE 432
GG VW +G DA P A H V QEE + R K R +
Sbjct: 52 GGAPTVWVSPEGGDAIERYRALPAEKRARHTHVAYLQEELDKERAKLARLRQ 103
>01_07_0369 -
43111835-43111882,43112172-43112245,43112670-43112754,
43112930-43113022,43113099-43113163,43114051-43114142,
43114240-43114527,43114642-43114706,43115421-43115502,
43115578-43115669,43116169-43116301,43116380-43116501,
43116624-43116725,43116853-43116892,43117032-43117103,
43117241-43117320,43117444-43117818
Length = 635
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 371 TASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFMFDDGAGD 523
T++ KR+K + K +YS + DEH+ F Q F + +GD
Sbjct: 128 TSASWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENSGD 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,132
Number of Sequences: 37544
Number of extensions: 351069
Number of successful extensions: 1073
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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