Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I08
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 180 6e-46
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 136 1e-32
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 32 0.33
U88170-7|AAO26016.1| 403|Caenorhabditis elegans Pantothenate ki... 30 1.0
U88170-6|AAM15553.1| 392|Caenorhabditis elegans Pantothenate ki... 30 1.0
U88170-5|AAB42246.2| 449|Caenorhabditis elegans Pantothenate ki... 30 1.0
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 1.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 1.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 1.8
Z93383-4|CAB07626.1| 96|Caenorhabditis elegans Hypothetical pr... 27 7.1
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 27 7.1
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 180 bits (438), Expect = 6e-46
Identities = 85/166 (51%), Positives = 114/166 (68%)
Frame = +2
Query: 5 EGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHG 184
EGKA+ +PGVLFIDEAHMLDIECFSFLNRA+E E +P++IMATNR I ++RGT+ S HG
Sbjct: 282 EGKAKFVPGVLFIDEAHMLDIECFSFLNRAIEGELSPLIIMATNRLIEKVRGTDVESAHG 341
Query: 185 IPLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
IP D LDRM+I+ PYT ++ +IL+IRC+EE ++ AL +L ++ TSLRY I L
Sbjct: 342 IPSDFLDRMLIINAIPYTKEDTAKILSIRCDEEGVKLQPTALDLLVKLQEATSLRYCIHL 401
Query: 365 ITTASLVAKRRKATEVSMEDVKKVYSSFLDEHRSEQFLKEYQDEFM 502
I + ++ R KA V+ + + Y F D RSE+ L E F+
Sbjct: 402 IAASEVIRIRSKAEIVTTDHIGSAYRLFFDTKRSEKILTEESAGFL 447
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 136 bits (329), Expect = 1e-32
Identities = 62/119 (52%), Positives = 86/119 (72%)
Frame = +2
Query: 8 GKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPVVIMATNRGITRIRGTNYRSPHGI 187
G AE++PGVLFIDE HMLD+ECF++L RALES APVV+ ATNRG T +RG ++PHGI
Sbjct: 309 GVAELMPGVLFIDEVHMLDVECFTYLYRALESPMAPVVVFATNRGTTTVRGLGDKAPHGI 368
Query: 188 PLDLLDRMIIVPTTPYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQL 364
P ++LDR++I+PT Y +++R+IL R E E+ Q A +LTR+ +T R I++
Sbjct: 369 PPEMLDRLMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLLTRLCAQTCGREVIEV 427
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 230 PYTHQELREILNIRCEEEDCQMSGDALTVLTRVATET-SLRYAIQLITTASLVAKRRKAT 406
PY H+++ EI+ R + + V +VA T LR A+ + A VA RK+
Sbjct: 450 PYQHEQIEEIVRARLQGSNLIDPKAVELVAKKVAMNTGDLRQALDFLCRAIRVAVERKSE 509
Query: 407 EVSMEDVKKVYSSFLD 454
++ + V ++ L+
Sbjct: 510 KLELSHVIAAQNAVLE 525
>U88170-7|AAO26016.1| 403|Caenorhabditis elegans Pantothenate
kinase protein 1,isoform c protein.
Length = 403
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 362 LITTASLVAKRRKATEVSMED----VKKVYSSFLDEHRSEQFLKEYQDEFMFDDG 514
++ + K RK + VS++ +K VYSS +DE E+ L + ++ ++DG
Sbjct: 54 ILPASDTFEKFRKTSRVSVDIGGTLIKVVYSSVMDEELPEESLNGHTRKYAYEDG 108
>U88170-6|AAM15553.1| 392|Caenorhabditis elegans Pantothenate
kinase protein 1,isoform b protein.
Length = 392
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 362 LITTASLVAKRRKATEVSMED----VKKVYSSFLDEHRSEQFLKEYQDEFMFDDG 514
++ + K RK + VS++ +K VYSS +DE E+ L + ++ ++DG
Sbjct: 100 ILPASDTFEKFRKTSRVSVDIGGTLIKVVYSSVMDEELPEESLNGHTRKYAYEDG 154
>U88170-5|AAB42246.2| 449|Caenorhabditis elegans Pantothenate
kinase protein 1,isoform a protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 362 LITTASLVAKRRKATEVSMED----VKKVYSSFLDEHRSEQFLKEYQDEFMFDDG 514
++ + K RK + VS++ +K VYSS +DE E+ L + ++ ++DG
Sbjct: 100 ILPASDTFEKFRKTSRVSVDIGGTLIKVVYSSVMDEELPEESLNGHTRKYAYEDG 154
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 310 DGSDARRHGNLTPVRHPADHHSVPRRQEEESHRGKYGRCEESLLVVPRRAQIGAV-PQGV 486
DG GN PV D V + E++ GK+ + +ES P+ +I V P G
Sbjct: 2276 DGKYLDEDGNEIPVNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGT 2335
Query: 487 P 489
P
Sbjct: 2336 P 2336
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 310 DGSDARRHGNLTPVRHPADHHSVPRRQEEESHRGKYGRCEESLLVVPRRAQIGAV-PQGV 486
DG GN PV D V + E++ GK+ + +ES P+ +I V P G
Sbjct: 2339 DGKYLDEDGNEIPVNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGT 2398
Query: 487 P 489
P
Sbjct: 2399 P 2399
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 310 DGSDARRHGNLTPVRHPADHHSVPRRQEEESHRGKYGRCEESLLVVPRRAQIGAV-PQGV 486
DG GN PV D V + E++ GK+ + +ES P+ +I V P G
Sbjct: 2339 DGKYLDEDGNEIPVNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGT 2398
Query: 487 P 489
P
Sbjct: 2399 P 2399
>Z93383-4|CAB07626.1| 96|Caenorhabditis elegans Hypothetical
protein F54B8.4 protein.
Length = 96
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 235 VRSGGDYDHPVEQVKGYPMGA--PVVRAPDPSYAPVRGHYDHGGG 107
VR D+D P + K YP A V P P+ P HY+ G
Sbjct: 41 VREAMDFDLPAKMEKAYPTAAVKQVHEKPTPAIQP--AHYNRATG 83
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Frame = +2
Query: 230 PYTHQELREILNIRCEEEDCQMSGDALTVLTRVATETSLRYAIQLITTASLVAKRRKATE 409
P++ Q+L I E+ + G + RVA +L + S V + + +
Sbjct: 570 PHSDQQLETI------HENLKQQGSLTNLQNRVAGIQTLISGFDVNNFNSTVLSKADSVQ 623
Query: 410 VSMEDVKKVYSSFLDEHRSEQFL-KEYQDEFMFDDGAGDAPQMMEVT 547
M+D + + + DE Q L K D M G ++ VT
Sbjct: 624 AGMDDTRGIMKAVADEMNFLQCLQKSSSDSVMLSKGVRAIQRLRNVT 670
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,354,725
Number of Sequences: 27780
Number of extensions: 258828
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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