Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I07
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   200   1e-52
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   199   2e-52
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    36   0.003
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    30   0.27 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   3.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  200 bits (487), Expect = 1e-52
 Identities = 94/160 (58%), Positives = 116/160 (72%)
 Frame = +2

Query: 53  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 232
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 233 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLLIVLD 412
             E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP L+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 413 PAQDHQPITEAFYVNIPVIALCNTDSPLRFVDIAIPCNTK 532
           P  D Q I EA +VNIPVIALC+TDS L  VD+AIP N K
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNK 169


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  199 bits (486), Expect = 2e-52
 Identities = 92/164 (56%), Positives = 118/164 (71%)
 Frame = +2

Query: 41  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 220
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 221 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLL 400
                 E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP L+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 401 IVLDPAQDHQPITEAFYVNIPVIALCNTDSPLRFVDIAIPCNTK 532
           +V DP  D Q I EA +VNIPVIALC+TDS L  VDIAIP N K
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNK 168


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 389 PMLLIVLDPAQDHQPITEAFYVNIPVIALCNTDSPLRFVDIAIPCNTKS 535
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 467 IALCNTDSPLRFVDIAIPCNTKSSHFHRS 553
           + LC+ +S  RF D+A+  NTK +HF R+
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFIRT 112


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +2

Query: 416 AQDHQPITEAFYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 541
           ++D   IT  F +  P     + + P+       PC   +SH
Sbjct: 500 SEDFMDITRPFNILSPSKEALSEEQPMELTSTVFPCENSTSH 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,222
Number of Sequences: 5004
Number of extensions: 41871
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)