Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I05
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   2.0  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 154 LNRYVKDLPRTPNGPNYQSSRKLY 225
           ++RY+ ++ R+PN P+YQ SR+ Y
Sbjct: 308 VHRYLAEV-RSPNVPDYQVSRRYY 330


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -2

Query: 331 IVHPCIQPWSSKKLILLHSYEMHIQPHYFQQEVLLHTTSYYFDNSVRLECEA 176
           IVHPC+   ++ K +     E  +   Y Q+++L+    +     +RL  +A
Sbjct: 196 IVHPCVDIEAASKPLEFQLPEKILYLRYSQRKLLISVNRFERKKDIRLAIDA 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,968
Number of Sequences: 5004
Number of extensions: 31836
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)