Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I05
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248...    27   8.0  

>09_04_0404 +
           17322664-17322718,17323676-17323849,17324695-17324876,
           17325312-17325417,17325708-17325784,17326485-17326572,
           17327320-17327509,17328353-17328479,17328584-17328664,
           17328815-17328916,17329042-17329137,17329279-17329353,
           17329746-17329865,17330319-17330447,17330762-17330839,
           17331330-17331416,17333538-17333651,17334294-17334362,
           17334741-17334785
          Length = 664

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = -2

Query: 301 SKKLILLHSYEMHIQPHYFQQEVLLHTTSYYFDNSVRLE 185
           SK+++  +++   +Q   F +++++HT S+ F ++ RLE
Sbjct: 270 SKRMLTQNTFST-VQTPEFYEKIVVHTLSHNFRDATRLE 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,648,283
Number of Sequences: 37544
Number of extensions: 155867
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)