Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I05
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr... 28 4.1
U53340-5|AAR25650.1| 425|Caenorhabditis elegans Hypothetical pr... 28 4.1
U53340-4|AAA96209.2| 445|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ... 28 4.1
Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical p... 27 5.5
AC084197-1|AAG23478.1| 328|Caenorhabditis elegans Serpentine re... 27 5.5
Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical pr... 27 7.2
U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine rec... 27 9.5
AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine re... 27 9.5
>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +2
Query: 53 YINFIEVYLFKKLWKTSTYLQTKSTLQSRCLKIF*IDMSK 172
YI+F V+LFKKL+++++ Q++S + + I + +S+
Sbjct: 38 YIDFKIVHLFKKLFRSTSPFQSRSVTTTERVHIVQLPVSE 77
>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +2
Query: 53 YINFIEVYLFKKLWKTSTYLQTKSTLQSRCLKIF*IDMSK 172
YI+F V+LFKKL+++++ Q++S + + I + +S+
Sbjct: 38 YIDFKIVHLFKKLFRSTSPFQSRSVTTTERVHIVQLPVSE 77
>U53340-5|AAR25650.1| 425|Caenorhabditis elegans Hypothetical
protein F02E8.2b protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 325 EQFRSADDKLLKVRSFINPVTELI 396
EQF ++ ++LL R+F+NP+ LI
Sbjct: 58 EQFNNSSNQLLLDRAFLNPILTLI 81
>U53340-4|AAA96209.2| 445|Caenorhabditis elegans Hypothetical
protein F02E8.2a protein.
Length = 445
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 325 EQFRSADDKLLKVRSFINPVTELI 396
EQF ++ ++LL R+F+NP+ LI
Sbjct: 58 EQFNNSSNQLLLDRAFLNPILTLI 81
>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +2
Query: 53 YINFIEVYLFKKLWKTSTYLQTKSTLQSRCLKIF*IDMSK 172
YI+F V+LFKKL+++++ Q++S + + I + +S+
Sbjct: 38 YIDFKIVHLFKKLFRSTSPFQSRSVTTTERVHIVQLPVSE 77
>Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical
protein C16C10.12 protein.
Length = 610
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 85 LKQINFNKINIELSIFYTSKVPTYFYL 5
LKQ +FNK N +L + + +FYL
Sbjct: 570 LKQFSFNKDNYQLDVIGLCSIVIFFYL 596
>AC084197-1|AAG23478.1| 328|Caenorhabditis elegans Serpentine
receptor, class v protein24 protein.
Length = 328
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 288 YCFTHMKCTFSLIIFSKKFFCIQLPTTLIIRSVWSARQIFDISI 157
Y F +++CT + + +++ I PT+++ + V A + ISI
Sbjct: 87 YYFLYIRCTGIIFLSLQRYLIITAPTSMLTQKVQFASKFQIISI 130
>Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical
protein C11H1.2 protein.
Length = 460
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -3
Query: 252 IIFSKKFFCIQLPTTLIIRSVWSARQIFDISI*NIFKQRLCKVDFVCKYVEVFHSFLNR* 73
+ FSK F I S++ +IF IS+ NI R+ KVD V + +EV +++
Sbjct: 281 VAFSKTFIGIYFNVLGHFFSLYCVWKIF-ISLVNILFDRVGKVDPVTRLIEVSVNYVGID 339
Query: 72 TSIKLI*NYLFF 37
++ Y+ F
Sbjct: 340 MDVRYWSQYISF 351
>U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine
receptor, class v protein32 protein.
Length = 342
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 288 YCFTHMKCTFSLIIFSKKFFCIQLPTTLIIRSVWSARQIFDISI 157
Y F +++CT + + +++ I PT+ I V +A ++ I++
Sbjct: 98 YYFLYIRCTGIIFLSLQRYLIITAPTSRITHKVQNASKLQIITV 141
>AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine
receptor, class x protein104 protein.
Length = 279
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 56 INFIEVYLFKKLWKTSTYLQTKSTLQSRCLKIF 154
INF Y F KL KTS Y+ S S + +F
Sbjct: 25 INFYMFYFFLKLQKTSFYVLCSSKTISNSIILF 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,243,074
Number of Sequences: 27780
Number of extensions: 169375
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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