Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I04
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    27   0.18 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 271 LRRGLGYHHVH-MMTAAMIVVTEGIMHAIALEGVDAVV 381
           LRR LGYH  H  + +A+IVV   I   I  E + A V
Sbjct: 209 LRRRLGYHLFHTYIPSALIVVMSWIAFWIKPEAIPARV 246


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -3

Query: 258 HNLVHH*TSLRERGVHILYVHLNLGWRPQRHEDLQILQKRNRVDFWPPIH-----FSKDH 94
           H+ +HH   L ++  +++Y + +   R Q H + +IL++  + D+   +H     F  DH
Sbjct: 73  HHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILREL-QTDYDRRLHDNSPSFLSDH 131

Query: 93  SK 88
           S+
Sbjct: 132 SR 133


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 345 HNALCHHNHSSGHHMDVVVAETAAED 268
           H A     H   H  D+VV   AA+D
Sbjct: 203 HAAFISMRHRGAHITDIVVLVVAADD 228


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 63  CWRCFPNRQHRFCSRHSATSC 1
           CW CF   Q++       T C
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQC 626


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 6   RSRYGDCKIYVGDLGNNASKPELEDAF 86
           R+RY D    V    N A+ PEL + F
Sbjct: 333 RTRYKDSSSSVEGWENRATIPELNEEF 359


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 114  IHFSKDHSKKMHLQVL 67
            + FSK+  K+ HLQ++
Sbjct: 1030 VDFSKEDGKEHHLQIM 1045


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 182 HPRFRWTYNMWTPRSRRDV*WWT 250
           HP     +N W P  R  +  WT
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWT 488


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 378 DCVYAFESNRVHNALCHH 325
           DC Y   ++ +  ALC+H
Sbjct: 139 DCRYVTTTSGMFEALCNH 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,441
Number of Sequences: 438
Number of extensions: 2707
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)