Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I03
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    39   3e-04
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    27   1.4  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    27   1.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   3.3  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   7.7  

>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 13/53 (24%), Positives = 33/53 (62%)
 Frame = +2

Query: 275 NAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAF 433
           + + ++  ++++ LY+++  L+ LEKA+ +D V   ++ + C  L+ Q++  F
Sbjct: 21  HTKNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCF 73


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 34  KGFLLLLIDANVHHIRESSITKNK 105
           KG+   ++DA +H++  S I KNK
Sbjct: 148 KGYGTKIVDAFLHYVESSGIAKNK 171


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = -3

Query: 235 ILHVCIKVISINKVSKNNFTLKTTLQSVKTTLQQCISIIYVQKTYFLL 92
           I+H  ++++ +NK+S     ++  ++ ++  +++   I+     YFLL
Sbjct: 88  IIHKAVQIVEVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLL 135


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = -3

Query: 454 LISLHLFECNFILHKEATTSCSVFLSPDTIS---HVSFLKV-L*CADHSIELSHIVMLFT 287
           LISL  F C+  L +    S S+FL  D +      + LK+ L  A +  E+ ++V    
Sbjct: 539 LISLEEFSCSCNLRENQPGSLSLFLQIDALELLLRKTALKLKLTDAVYQQEMLNVVQRCV 598

Query: 286 FSGISI-ELYFFI*FWP------CILHVCIKVISINKVSKNNFTLKTTLQSVKTTLQQCI 128
              ++I E +F   FWP      CIL   I  + ++     NF   TT   + +  + C+
Sbjct: 599 SHFLAINESHFTDFFWPYSQFYFCILSSAIIKMYLDFEFNENFN-ATTFGLLSSFTKHCV 657


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 279  PENVKSMTIWLSSMLWSAHYSTL 347
            PEN K+    L+SML S HY +L
Sbjct: 1478 PENKKAKIGLLNSMLQSGHYESL 1500


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 197 FVDRYYFYTNMQDTRPELYEEVKLYRNAREREKHDNMAEL 316
           F +R+Y   +  D+R   YEEV+ Y N+   E  +    L
Sbjct: 461 FEERFYSLYSYLDSRGLKYEEVQRYYNSLIPESRERAGAL 500


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 267 SIEMPENVKSMTIWLSSMLWSAHYS 341
           S+ +P+N K   +W++S+ W    S
Sbjct: 411 SLPLPKNKKVTFVWVNSLQWKTWIS 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,169
Number of Sequences: 5004
Number of extensions: 35379
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)