Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I03
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0927 + 33082645-33083286                                         60   1e-09
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278...    27   5.8  
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64...    27   5.8  
03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412           27   5.8  
09_03_0073 - 12092566-12092645,12092788-12092869,12092979-120932...    27   7.6  

>01_06_0927 + 33082645-33083286
          Length = 213

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 25/55 (45%), Positives = 40/55 (72%)
 Frame = +2

Query: 257 EVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQY 421
           EVKL+ + RERE  +++A+LYA++   + LE+AY+RD V A +Y A C +L+ Q+
Sbjct: 2   EVKLWNDKRERELLESLADLYAIIKATEKLERAYVRDLVSAADYEAECLKLISQF 56


>08_01_1011 +
           10226160-10226676,10226794-10226810,10227677-10227886,
           10227921-10228406
          Length = 409

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 23/98 (23%), Positives = 45/98 (45%)
 Frame = -3

Query: 445 LHLFECNFILHKEATTSCSVFLSPDTISHVSFLKVL*CADHSIELSHIVMLFTFSGISIE 266
           L  F+    ++K    S  + L+  T  +++ L+ + C   +I  + + + F      + 
Sbjct: 152 LDAFQNISTVNKLCFISDKLRLTSFTQFNINMLEGITCKFENIREARLTIDFGQRSNVLS 211

Query: 265 LYFFI*FWPCILHVCIKVISINKVSKNNFTLKTTLQSV 152
           L   + F P I H+CI VI  + +    + LKT+L  +
Sbjct: 212 LASLLKFAPHIEHLCISVILDSHLQLICYNLKTSLGQI 249


>06_01_0081 +
           646100-646346,646432-646848,647067-647170,648152-648352,
           649088-649798,649944-650674,650942-651017,651096-651182,
           651429-651517,651917-651973,652402-652510,652590-652649,
           652835-652919,653178-653242,653694-653753,653869-653913,
           654697-654800,654877-655099
          Length = 1156

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 284 EREKHDNMAELYAVVSTL-QHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFP 460
           + E+H   A+L A VSTL +H+         R ++ +  CS   V+   A + V     P
Sbjct: 45  DSERHFTCADLLAAVSTLSRHIAAELSSSTSRHRDESPGCSGRPVEAAAAPRVVGVYASP 104

Query: 461 NIE 469
           ++E
Sbjct: 105 SVE 107


>03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412
          Length = 342

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 457 KLISLHLFECNFILHKEATTSCSVFLSPDTISHVSF 350
           K I L   EC F   K  +   S F+SP+ I+ +SF
Sbjct: 188 KAIVLRAIECIFASIKGRSFPPSAFISPNRIARISF 223


>09_03_0073 -
           12092566-12092645,12092788-12092869,12092979-12093236,
           12093314-12093463,12093581-12093724,12093744-12094077,
           12094639-12094785,12097446-12097695,12100511-12100616
          Length = 516

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +2

Query: 188 FTDFVDRYYFYTNMQDTRPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRD 367
           FTDF D  YF  + +     ++     Y NA   +K  N+A+    ++ + H+    M  
Sbjct: 208 FTDFGDDTYFVADQRGYESVVHHLAGQYLNA---DKSGNIADARLKLNKVDHITSDAMIF 264

Query: 368 CVRAQEYTAACSRLLVQYKVAF 433
            VR  E       ++V  ++++
Sbjct: 265 SVRKDELIKHAIIMVVVREISY 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,693
Number of Sequences: 37544
Number of extensions: 192997
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)