Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I03
         (471 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050713-1|AAH50713.1|  233|Homo sapiens vacuolar protein sortin...   126   5e-29
BC019321-1|AAH19321.1|  221|Homo sapiens vacuolar protein sortin...   126   5e-29
BC006485-1|AAH06485.1|  221|Homo sapiens vacuolar protein sortin...   126   5e-29
AF316887-1|AAK00314.1|  221|Homo sapiens vacuolar sorting protei...   126   5e-29
AF182844-1|AAF00499.1|  221|Homo sapiens VPS28 protein protein.       126   5e-29
AF132955-1|AAD27730.1|  324|Homo sapiens CGI-21 protein protein.       30   3.5  

>BC050713-1|AAH50713.1|  233|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 233

 Score =  126 bits (303), Expect = 5e-29
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = +2

Query: 239 RPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQ 418
           +PELYEEVKLY+NAREREK+DNMAEL+AVV T+Q LEKAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 419 YKVAFKQVQADEFPNIE 469
           YK AF+QVQ  E  +I+
Sbjct: 77  YKAAFRQVQGSEISSID 93


>BC019321-1|AAH19321.1|  221|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 221

 Score =  126 bits (303), Expect = 5e-29
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = +2

Query: 239 RPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQ 418
           +PELYEEVKLY+NAREREK+DNMAEL+AVV T+Q LEKAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 419 YKVAFKQVQADEFPNIE 469
           YK AF+QVQ  E  +I+
Sbjct: 77  YKAAFRQVQGSEISSID 93


>BC006485-1|AAH06485.1|  221|Homo sapiens vacuolar protein sorting
           28 homolog (S. cerevisiae) protein.
          Length = 221

 Score =  126 bits (303), Expect = 5e-29
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = +2

Query: 239 RPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQ 418
           +PELYEEVKLY+NAREREK+DNMAEL+AVV T+Q LEKAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 419 YKVAFKQVQADEFPNIE 469
           YK AF+QVQ  E  +I+
Sbjct: 77  YKAAFRQVQGSEISSID 93


>AF316887-1|AAK00314.1|  221|Homo sapiens vacuolar sorting protein
           28 protein.
          Length = 221

 Score =  126 bits (303), Expect = 5e-29
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = +2

Query: 239 RPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQ 418
           +PELYEEVKLY+NAREREK+DNMAEL+AVV T+Q LEKAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 419 YKVAFKQVQADEFPNIE 469
           YK AF+QVQ  E  +I+
Sbjct: 77  YKAAFRQVQGSEISSID 93


>AF182844-1|AAF00499.1|  221|Homo sapiens VPS28 protein protein.
          Length = 221

 Score =  126 bits (303), Expect = 5e-29
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = +2

Query: 239 RPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQ 418
           +PELYEEVKLY+NAREREK+DNMAEL+AVV T+Q LEKAY++DCV   EYTAACSRLLVQ
Sbjct: 17  KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQ 76

Query: 419 YKVAFKQVQADEFPNIE 469
           YK AF+QVQ  E  +I+
Sbjct: 77  YKAAFRQVQGSEISSID 93


>AF132955-1|AAD27730.1|  324|Homo sapiens CGI-21 protein protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 185 QLYTKNNFTVSKNNFTTMYKYYIC 114
           +++TKNNF V KN  +  + YY C
Sbjct: 294 KIFTKNNFFVEKNPTSCQFPYYKC 317


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,945,415
Number of Sequences: 237096
Number of extensions: 1126405
Number of successful extensions: 2351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)