Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I03
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical...    71   4e-13
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    28   2.9  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    28   2.9  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    28   2.9  
Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium chann...    27   6.8  
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical
           protein Y87G2A.10 protein.
          Length = 210

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 32/72 (44%), Positives = 47/72 (65%)
 Frame = +2

Query: 227 MQDTRPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSR 406
           M      L  EV+L+ N  ERE+ +N++EL+AV++ L+HLEK + RD V A EY + C +
Sbjct: 1   MSSQNANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFK 60

Query: 407 LLVQYKVAFKQV 442
           L+ QYKV  + V
Sbjct: 61  LIDQYKVTMRLV 72


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 176  CKVVFTDFVDRYYFYTNMQDTRPELYEEVK--LYRNAREREKHDNMAELYAVVSTLQHLE 349
            C ++ T F       ++  D +  L  +VK   YR  R+R +   MA+L      LQ L+
Sbjct: 1148 CAIIGTPFDSLEMSNSHHSDVQTTLQTQVKDQRYRRIRDRNEKPTMAQLVYEQLILQRLQ 1207

Query: 350  KAY 358
            + Y
Sbjct: 1208 RGY 1210


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 176  CKVVFTDFVDRYYFYTNMQDTRPELYEEVK--LYRNAREREKHDNMAELYAVVSTLQHLE 349
            C ++ T F       ++  D +  L  +VK   YR  R+R +   MA+L      LQ L+
Sbjct: 1148 CAIIGTPFDSLEMSNSHHSDVQTTLQTQVKDQRYRRIRDRNEKPTMAQLVYEQLILQRLQ 1207

Query: 350  KAY 358
            + Y
Sbjct: 1208 RGY 1210


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 254  EEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQYK 424
            EEVK+Y   +E EK   +AE        Q+ E  Y RD +     T      L +Y+
Sbjct: 1058 EEVKIYTQMQEYEKQKKIAEAKLSTKECQNAESNY-RDAIIELAITKESISDLTKYR 1113


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 254  EEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQYK 424
            EEVK+Y   +E EK   +AE        Q+ E  Y RD +     T      L +Y+
Sbjct: 1044 EEVKIYTQMQEYEKQKKIAEAKLSTKECQNAESNY-RDAIIELAITKESISDLTKYR 1099


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 254  EEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSRLLVQYK 424
            EEVK+Y   +E EK   +AE        Q+ E  Y RD +     T      L +Y+
Sbjct: 1044 EEVKIYTQMQEYEKQKKIAEAKLSTKECQNAESNY-RDAIIELAITKESISDLTKYR 1099


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 388 VFLSPDTISHVSFLKVL*CADHSIELSHIVMLFTFSGISIELYFFI 251
           +F  P TI ++  LKV+    H  E +  + +FT  GIS   YF +
Sbjct: 25  IFCIPATIHYIIVLKVV---SHLKENNSFLFIFTILGISDIFYFVV 67


>Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical
           protein F13A7.2 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 262 YFFI*FWPCILHVCIKVISINKVSKNNFTLKTTLQSVKTTLQQCISIIYVQKT 104
           YFF  +W  +  +C+ +     +   NFT K TLQ+VK  L    + + +  T
Sbjct: 6   YFFRYYWQLVYMICLMLYITMYILIYNFTGK-TLQTVKYFLYPSCTAMLIAMT 57


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 285 NVKSMTIWLSSMLWSAHYSTLRKLT*EIVSG----LRNTLQLVVASLCNIKLHSNKCKLM 452
           N+     +L+ +  + +Y     LT   +S     L+N ++L+ A    I    N+CKL+
Sbjct: 410 NLNLAITYLNQLKMADYYEVSENLTAPKISSCSQMLKNNVKLLSAFFAYITNKLNECKLL 469

Query: 453 SFQIL 467
           S ++L
Sbjct: 470 SHEVL 474


>U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical
           protein F28F9.2 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 456 NSSACTCLNATLYCTRRRLQAAV 388
           +++ C C + T +C RR L+AA+
Sbjct: 111 STAQCPCTSQTFFCARRALRAAL 133


>AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium channel,
           beta subunit protein2 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 260 VKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRA 379
           +KL  N++  ++H    E +A +  LQH ++ ++   V+A
Sbjct: 25  IKLMHNSQRDDQHRKDVEHFAALRALQHSKRKHVAFAVQA 64


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 244 WPCILHVCIKVISINKVSKNNFTL 173
           W C+L   ++VI + K++ N F +
Sbjct: 104 WLCVLFALVRVIVLQKINDNRFQI 127


>Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical
           protein T22H6.1 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 223 CIKVISINKVSKNNFTLK 170
           CI VI +N    NNF+LK
Sbjct: 186 CIPVIQVNSFKSNNFSLK 203


>U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical
           protein C35D10.7b protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 176 CKVVFTDFVDRYYFYTNMQDTRPE 247
           C V+ T F+D YY + +    +PE
Sbjct: 244 CTVLLTKFIDSYYDFRSTMKLKPE 267


>U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical
           protein C35D10.7a protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 176 CKVVFTDFVDRYYFYTNMQDTRPE 247
           C V+ T F+D YY + +    +PE
Sbjct: 295 CTVLLTKFIDSYYDFRSTMKLKPE 318


>AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical
           protein Y48C3A.4 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 167 CF*CKVVFTDFVDRYYFYTNMQDTRPELYEEVKLYRNAREREK 295
           C+ C++     +D+Y  YT+M++  P    +V ++ + R+  K
Sbjct: 288 CYQCRLCGWQAIDKYKIYTHMREEHP---RKVDMFVDKRDMPK 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,362,612
Number of Sequences: 27780
Number of extensions: 203798
Number of successful extensions: 600
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)