Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I02
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 52 7e-08
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 38 7e-04
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.7
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 3.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 3.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 4.0
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c... 25 5.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.3
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 25 5.3
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 5.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.3
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 25 7.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.0
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 7.0
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.2
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 9.2
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 9.2
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 9.2
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 51.6 bits (118), Expect = 7e-08
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +1
Query: 253 VILNPVANKRKAKKEFEKYCEPLLHLAGLQIDVIHTASEGNAKEIVESLH--GTEAIIVA 426
V +NP K KAK +E EP+ A +V+ T + +AK I ++L + I+
Sbjct: 110 VFINPHGGKGKAKHIWESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDGILSV 169
Query: 427 GGDGTLSETVTGLLRRND--EANRFPLGILPLG 519
GGDG E + GL R+D EA + P+ ++P G
Sbjct: 170 GGDGLFHEVINGLGERDDYLEAFKLPVCMIPGG 202
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 38.3 bits (85), Expect = 7e-04
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Frame = +1
Query: 61 IVKFSKTVRNNWKKSVF-GVIAFYYGAATVKERYEINIIMRAACKEAAKYGEA-VIPMER 234
++K K+ S+F G +A GA R + N+I+ C + + + P+E
Sbjct: 1 MLKTIKSYMPGRNMSIFLGFVAGISGAIYYDRRQK-NLIIEKYCSQVRHLADQPMAPLEL 59
Query: 235 NPTLMTVILNPVANK-RKAKKEFEKYCEPLLHLAGLQIDVIHTASEGNAKEIV 390
L + P + A++EFE+Y P+ + A ++ + + + EGN E V
Sbjct: 60 PRKLKVYLHGPPGDGIYVAREEFEEYIRPIFNAAAIEFETVESKGEGNLLEQV 112
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 527 FVRPSGKIPKG-KRLASSFLLNSPVTVSDNVPSPPAT 420
F++ S ++ K+ SFL +P+T+ N +PPA+
Sbjct: 362 FLQSSNELASSLKKQLPSFLAQTPLTLPSNTKTPPAS 398
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 73 SKTVRNNWKKSVFGVIAFYYGAATVKERYEINIIMRAACKEAAKYGEAVIPMERNPTLMT 252
++ V +N KKSV+ + YY +ATVK+ + + + + + A ME P
Sbjct: 164 TEMVSSNAKKSVYPL---YYDSATVKKGLKSGTLFKGTLRILENHRSAFACMEDIPDF-- 218
Query: 253 VILNPVANKR 282
+ P+A R
Sbjct: 219 YVDGPIARNR 228
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 88 NNWKKSVFGVIAFYYGAATVKERYEINIIMRAACKEAAKYGEAVIPMERNPTLMTVILN 264
N +K +A Y K+ E +I+ ++ ++ E +PM R PT M+ ++
Sbjct: 500 NTLEKEPLSDVATEYWKIKTKDIRESHILNNRRILKSLQFIETELPMIRKPTAMSAFID 558
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = -1
Query: 482 SSFLLNSPVTVSDNVPSPP-------ATMIASVPCNDSTISLALPSDA 360
S F +SP +S + P+PP +T+ +S+P + T S PS++
Sbjct: 223 SPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPSSRHTTSNHFPSNS 270
>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 17 MFWFFFVNTDKTWKKL*NFP 76
+ +F T KTWKK+ NFP
Sbjct: 122 ILYFKCYGTFKTWKKIANFP 141
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.3
Identities = 24/109 (22%), Positives = 45/109 (41%)
Frame = -1
Query: 518 PSGKIPKGKRLASSFLLNSPVTVSDNVPSPPATMIASVPCNDSTISLALPSDAVCITSIC 339
PS +SS +S + S + S ++ +S + S+ S + S +V ITS
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 338 NPAKCKSGSQYXXXXXXXXXXXATGLSITVISVGFLSIGMTASPYLAAS 192
+ + S S ++ T+ S F+S +T +P ++S
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIST-VTVTPSSSSS 262
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 193 EAAKYGEAVIPMERNPTLMTVILNPVANKRKAKKEFEKYCEPLLHL 330
+AAK G ++ P+E P L+ V + + +A E+ + EP+L L
Sbjct: 176 KAAK-GSSIKPIELLPKLLPVYVELIKKLTEAGAEYIQIDEPILTL 220
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 322 LHLAGLQIDVIHTASEGNAKEIVESLHGTEAIIVAGGDGTLSETV 456
LH GL++ ++ S + HG I +A G G +SETV
Sbjct: 38 LHFRGLRLLLLQCLSHFWDHDEKFKSHGLHVIDLACGSGEVSETV 82
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 5.3
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1
Query: 485 ASSFLLNSP---VTVSDNVPSPPATMI-ASVPCNDSTISLALPSDAVCI 351
AS+ L+N P +TVSD P PA+ + + P + + +S P+ V I
Sbjct: 673 ASAKLINDPSSTITVSDVYPKKPASPVEITEPPSSALVSATSPTTNVPI 721
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 376 AKEIVESLHGTEAIIVAGGDGTLS 447
AK ++ + G ++IIV GGDG+L+
Sbjct: 281 AKNLISA--GIDSIIVCGGDGSLT 302
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 485 ASSFLLNSPVTVSDNVPSPPATMIASVPCNDSTISLALPSDAVCITS 345
+SS L NS + + VP+ +T +S ++STI + A IT+
Sbjct: 106 SSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISASTITT 152
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 91 NWKKSVFGVIAFYYGAATVKERYEINIIMRAACKEAAKY 207
+W++ F +AF YG K +I+++ + A E +K+
Sbjct: 325 HWQE-YFSALAFLYGPLDCKNPEDISLLYQLATGEDSKF 362
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +1
Query: 211 EAVIPMERNPT-LMTVILNPVANKRKAKKEFEKYCEPLL-HLAGL-QIDVIHTAS 366
E V+ +N + L TV+ P+A+ K+ ++ E+Y + LL + GL +IH+ S
Sbjct: 989 EIVLKHTKNTSVLFTVLPAPLADTHKSFRKSEEYVDDLLIFMEGLPPCALIHSKS 1043
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 521 RPSGKIPKGKRLASSFLLNSPVTVSDNVPS 432
+P +P ++SS L SPV S N+P+
Sbjct: 450 QPPVVVPSNTTISSSPPLTSPVKTSANIPN 479
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.6 bits (51), Expect = 9.2
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +1
Query: 148 KERYEINIIMRAACKEAAKYGEAVIPMERNPTLMTVILNPVANKRKAKKEFEKYCE 315
K Y + + K+ E P R+ L V ++ V + K +FEKY +
Sbjct: 751 KAGYSHTLAVPGKHKQNISMAETFSPSPRHDLLRQVAMSSVKAETKELSKFEKYAK 806
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.2
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 148 KERYEINIIMRAACKEAAKYGEAVIPMERNPTLMTVILNPVANKRKAKKEFEKYCEPL 321
KE ++ + R K+ K+ E VI E + TV+ A KRK +K+F+K P+
Sbjct: 185 KETEKMPMAARRGMKKKQKHIEKVIENEARES-GTVL----AKKRKERKQFKKGFRPV 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,642
Number of Sequences: 5004
Number of extensions: 46802
Number of successful extensions: 173
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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