Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I01
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   0.97 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   1.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   5.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    24   6.8  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    24   6.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    23   9.0  

>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 119 ASPQVLARGRNAGRED-DEVDEDQLNR 42
           A P  +A+GR A R+D DE D D L R
Sbjct: 168 AGPIAIAQGRKAPRQDPDESDVDVLRR 194


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 143 LARQEYYRPWRHLAAAVKDIGSSIKVDKDKFQV 241
           L    Y + W+ L++ VK I  S   DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 95  GRNAGREDDEVDEDQLNRN 39
           G N    ++ ++ED LNRN
Sbjct: 383 GNNESENEEVIEEDNLNRN 401


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  GLALTPEDLLTITPTPHLARQEYYRPW 172
           G+  TPED ++  P+     +++ +PW
Sbjct: 175 GVVGTPEDFVSYLPSTDSNDKKFRKPW 201


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 305 YTHATVLSRNLFRSE 261
           ++H TVL R LFR E
Sbjct: 13  FSHKTVLKRRLFRKE 27


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 125 ITPTPHLARQEYYRPWRH 178
           + P PH   +  ++PW+H
Sbjct: 376 LRPVPHNVTKPDHKPWKH 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,572
Number of Sequences: 5004
Number of extensions: 18074
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)