Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I01
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    26   6.2  
02_05_1162 - 34593101-34594624                                         26   6.2  
09_01_0057 - 916973-917287,917371-917495,917587-918241                 26   8.3  
08_02_0610 + 19307537-19308011,19308187-19310846                       26   8.3  
04_03_0357 + 14852584-14853058,14853116-14855754                       26   8.3  
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     26   8.3  

>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 152 AWRDVV*A*SLAS--PQVLARGRNAGREDDEVDED 54
           +WRD +   SL     Q + +GR  G E D  DED
Sbjct: 308 SWRDGIRVRSLLGCLKQAMGQGRRGGDEVDAADED 342


>02_05_1162 - 34593101-34594624
          Length = 507

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 122 TITPTPHLARQEYYRP 169
           T+TPTP  A  EYY P
Sbjct: 347 TVTPTPPTATPEYYLP 362


>09_01_0057 - 916973-917287,917371-917495,917587-918241
          Length = 364

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 164 RPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQ 256
           RPW    AAV  +  + KV++ +  V LD+Q
Sbjct: 120 RPWMARLAAVACVALAAKVEETRVPVLLDLQ 150


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 110 QVLARGRNAGREDDEVDEDQLNRNHRNTV 24
           Q L   R +  + DE++E+Q  R+ +N +
Sbjct: 696 QTLGGNRRSALDPDEIEEEQRERDRKNRI 724


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 110 QVLARGRNAGREDDEVDEDQLNRNHRNTV 24
           Q L   R +  + DE++E+Q  R+ +N +
Sbjct: 736 QTLGGNRRSALDPDEIEEEQRERDRKNRI 764


>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 113 DLLTITPTPHLARQEYYRPWRHLAAAVKDIGSSIKVDKDKFQVN 244
           D +T+ P   L  +EY R   +  A +++IG        +F VN
Sbjct: 317 DSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVN 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,352,846
Number of Sequences: 37544
Number of extensions: 119377
Number of successful extensions: 286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)