Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I01
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14334-1|AAA28070.1|  144|Caenorhabditis elegans protein ( C.ele...    29   0.79 
K03273-3|AAA28067.1|  144|Caenorhabditis elegans heat shock prot...    29   0.79 
X01576-1|CAA25731.1|  135|Caenorhabditis elegans C-terminal frag...    27   4.2  
U64837-7|AAB04841.1|  143|Caenorhabditis elegans Heat shock prot...    27   4.2  
U64837-6|AAB04840.1|  143|Caenorhabditis elegans Heat shock prot...    27   4.2  
K03273-2|AAA28069.1|  143|Caenorhabditis elegans heat shock prot...    27   4.2  
AC006774-2|AAF60616.1|  143|Caenorhabditis elegans Heat shock pr...    27   4.2  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF038609-3|AAU87825.1|  193|Caenorhabditis elegans Hypothetical ...    25   9.7  

>M14334-1|AAA28070.1|  144|Caenorhabditis elegans protein (
           C.elegans heat shockprotein genes 16-41 and 16-2,
           complete cds, flanked byCeRep16 repetitive elements. ).
          Length = 144

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKD-IGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D IG  I  D+ KF V LDV HF
Sbjct: 29  YWRNADHNSFNFSDNIGEQIVNDESKFSVQLDVSHF 64


>K03273-3|AAA28067.1|  144|Caenorhabditis elegans heat shock protein
           16-48a protein.
          Length = 144

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKD-IGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D IG  I  D+ KF V LDV HF
Sbjct: 29  YWRNADHNSFNFSDNIGEQIVNDESKFSVQLDVSHF 64


>X01576-1|CAA25731.1|  135|Caenorhabditis elegans C-terminal
           fragment of hsp 16-48 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D    I  D+ KF V LDV HF
Sbjct: 21  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHF 55


>U64837-7|AAB04841.1|  143|Caenorhabditis elegans Heat shock protein
           protein 16.49 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D    I  D+ KF V LDV HF
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHF 63


>U64837-6|AAB04840.1|  143|Caenorhabditis elegans Heat shock protein
           protein 16.48 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D    I  D+ KF V LDV HF
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHF 63


>K03273-2|AAA28069.1|  143|Caenorhabditis elegans heat shock protein
           16-48 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D    I  D+ KF V LDV HF
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHF 63


>AC006774-2|AAF60616.1|  143|Caenorhabditis elegans Heat shock
           protein protein 16.41 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 158 YYRPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQHF 262
           Y+R   H +    D    I  D+ KF V LDV HF
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHF 63


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 110 EDLLTITPTPHLARQEYYRPW 172
           ++ L I  TP LA  EY+ PW
Sbjct: 269 KESLDIDSTPRLASCEYFTPW 289


>AF038609-3|AAU87825.1|  193|Caenorhabditis elegans Hypothetical
           protein C54E4.5 protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 164 RPWRHLAAAVKDIGSSIKV 220
           +PW HLA  + D+G  + V
Sbjct: 104 KPWMHLAGLIHDLGKIMSV 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,195,535
Number of Sequences: 27780
Number of extensions: 99472
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)