Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H24
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    47   1e-06
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    31   0.057
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   1.2  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   3.8  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   5.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   6.6  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   6.6  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.6  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
 Frame = +2

Query: 17  NLELIKRALFREFGVKSIINERQDIIV-RDKYKVSGTAAKLGHLTGYHHCTLLVNANKAD 193
           N  ++ +AL R  GV + +N+R DI++ + + K+SG+A K+     YHH T+L+N++   
Sbjct: 121 NASIMIQAL-RNLGVHARLNQRHDIVLAQSQRKISGSAYKISRNRCYHHGTMLLNSDLEG 179

Query: 194 LSKALAKRET----HATASTRSEVAN 259
           + + L    T       +STRS V+N
Sbjct: 180 VREYLRSPSTGILSKGVSSTRSPVSN 205


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 31.5 bits (68), Expect = 0.057
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +2

Query: 125 AAKLGHLTGYHHCTLLVNANKADLSK---ALAKRETHATASTRSEVANLT--DLDNRVTV 289
           A  L H  G     +L   +K D +K    LA +E  A +S  S   +++    D   TV
Sbjct: 506 AKHLSHNYGSRAPLILELYSKTDFNKLPVTLADKEVFAPSSDASSDKSVSYASFDEPFTV 565

Query: 290 ESLQTALGYEYLRTP 334
             L+ ++ YEY RTP
Sbjct: 566 AELKYSIKYEYTRTP 580


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 397 NELESTLF*DQVLSSVI*MECRSAEVLVA*RSL*AFHSHSIIQVGQIRHLGPRRCRRVSL 218
           N  + TL  DQV   +I  EC S EV +   +L    SH + +V  ++      C +VSL
Sbjct: 382 NSFDFTLENDQVPPRLIASECTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHC-KVSL 440


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 185 KADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPAL-HLDDGGQ 361
           K   + A A ++    A   +   + TDL N V  E L+   G E++    + H+D G  
Sbjct: 193 KTPSAPAAALKKAAEAAEPATVTEDATDLQNEVDQELLKDMYGKEHVNIVFIGHVDAGKS 252

Query: 362 NL 367
            L
Sbjct: 253 TL 254


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 148 CQMAQLCSCPRDFIFISDNDILTFID 71
           C+  QL   PRDF+ +  +++  F+D
Sbjct: 568 CEYLQLLKMPRDFLQLVCDEVPPFLD 593


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 429 ARPGNQSSVGLTNWNPRCFEIRFCPPSSRWS 337
           +RP +QSS+ L+NW+   F     P  S+ S
Sbjct: 148 SRPSSQSSIFLSNWS-TIFSSNASPTDSQLS 177


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 227 ATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPAL 340
           A  +T ++ ANL   +  +T E+  T+ G E   +P+L
Sbjct: 67  AAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSL 104


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 283 HSIIQVGQIRHLGPRRCRRVSL 218
           HS +++GQI HL   + R++ L
Sbjct: 84  HSFLEIGQIPHLKLSKTRKIVL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,609
Number of Sequences: 5004
Number of extensions: 30197
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)