Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H24
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0655 + 30668706-30668849,30669043-30669471                       28   3.7  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    28   3.7  
05_05_0147 + 22715144-22715444,22716245-22716407,22716484-227165...    27   4.9  

>02_05_0655 + 30668706-30668849,30669043-30669471
          Length = 190

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 226 RDGIDAVRGGESDRLG*SSDCGKPT-NCARLRVPPHSGTPSR*RR 357
           ++ I   + G   RLG  S C  P    A    PPH+ TPS  RR
Sbjct: 47  KEVIKTSQSGSLLRLGLVSPCSAPPLPTAAAYTPPHTNTPSSRRR 91


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 18/77 (23%), Positives = 37/77 (48%)
 Frame = +2

Query: 62  KSIINERQDIIVRDKYKVSGTAAKLGHLTGYHHCTLLVNANKADLSKALAKRETHATAST 241
           KS  N   +++V+ +  +  T + +  L   +   + ++A   +L K L ++ET     T
Sbjct: 214 KSFSNYHDEVLVKREELLQFTQSAISGLKR-NSDIMRIDAEAVELWKKLNEKETSRVQQT 272

Query: 242 RSEVANLTDLDNRVTVE 292
           + + A  T+  +  TVE
Sbjct: 273 QEDHAKTTERTSATTVE 289


>05_05_0147 +
           22715144-22715444,22716245-22716407,22716484-22716532,
           22716626-22716739,22716812-22717234,22717307-22717693,
           22717777-22717872,22717978-22718093,22718137-22718272,
           22718392-22718480,22718586-22718736,22719057-22719185,
           22719276-22719354,22719435-22719544
          Length = 780

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 223 SLTFCKCLAEICLIGVD*KCAMVITCQMAQLCSCPRD 113
           ++ F K +A    IG        +TC   +L SCPRD
Sbjct: 345 NINFHKVIALTIAIGAATHTLAHVTCDFPRLVSCPRD 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,351,529
Number of Sequences: 37544
Number of extensions: 217026
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)