Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H24
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical pr... 58 4e-09
AF067609-11|AAC17532.2| 252|Caenorhabditis elegans Hypothetical... 32 0.15
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 28 2.5
Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 5.8
Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical p... 27 5.8
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 5.8
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 5.8
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 27 7.7
D49525-2|BAA08471.1| 567|Caenorhabditis elegans TPA-1B protein. 27 7.7
D49525-1|BAA08470.1| 704|Caenorhabditis elegans TPA-1A protein. 27 7.7
D14815-1|BAA03556.1| 557|Caenorhabditis elegans TPA-1 protein. 27 7.7
AF078781-3|AAC26917.1| 567|Caenorhabditis elegans Tpa (tetradec... 27 7.7
AF078781-2|AAC26916.1| 704|Caenorhabditis elegans Tpa (tetradec... 27 7.7
>Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical
protein C45G3.3 protein.
Length = 289
Score = 57.6 bits (133), Expect = 4e-09
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Frame = +2
Query: 17 NLELIKRALFREFGVKSIINERQDIIVRD-KYKVSGTAAKLGHLTGYHHCTLLVNANKAD 193
NL+ I AL ++F VK + N+R D+ + + K SGTAA++ YHH TLLV A+
Sbjct: 109 NLKFISDALNQQFSVKIVPNKRDDMELHPGERKCSGTAARIARGQAYHHLTLLVGADLQV 168
Query: 194 LSKALA-----KRETHATASTRS-EVANLTDLDNRVTVESLQTALGYEY 322
LSK+L K E++AT S R+ V L D VE + A+ Y
Sbjct: 169 LSKSLKSPWRDKIESNATRSVRAPAVGFLKQDDANANVEQSKLAIVEAY 217
>AF067609-11|AAC17532.2| 252|Caenorhabditis elegans Hypothetical
protein C23H5.1 protein.
Length = 252
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 269 LDNRVTVESLQTALGYEYLRTPALHLDDGGQNLISKQRGFQFVNPTDD 412
L +R E A G+ + A H D +NL+ +Q FQF+NP D
Sbjct: 197 LHSREFYEQCFKAAGFSQIEWIAPHFTDHAKNLLGEQFCFQFLNPPCD 244
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 185 KADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTAL 310
K +S LA++ TH++ ST V N +L +++ TAL
Sbjct: 926 KKKVSPLLARQATHSSKSTTLSVPNRANLRETKSIDETPTAL 967
>Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical
protein F28B1.3 protein.
Length = 802
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 136 QLCSCPRDFIFISDNDILTFIDYGFDTKFSEERSF 32
+LC C FIF SDN++ F F F ++R F
Sbjct: 478 RLCHCAPPFIFQSDNEM--FNSDSFSVIFDKKRMF 510
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 56 GVKSIINERQDIIVRDKYKVSGTAAKLGHLTGYHHCTLLVNANKADLSKALAKRETHATA 235
G+K + R + + R+K V A + L+G+++ +KAD+ +ALA +
Sbjct: 633 GIKIEYHSRIEFLPREKMTV---AIPMSELSGWYNAEARSPVDKADMMRALANVDRFTVR 689
Query: 236 ST 241
+T
Sbjct: 690 AT 691
>Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical
protein F32D8.13 protein.
Length = 187
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 242 RSEVANLTDLDNRVTVESLQTALGYEYL----RTPALHLDDGGQNLISKQRGFQFVNPTD 409
R+ +++ D D V + + YEY RT + ++ ++ KQRG+QFV D
Sbjct: 88 RAAISSTMDSDI-VIISDCRRRTDYEYFSANYRTVTIRIETSEED--RKQRGYQFVEGVD 144
Query: 410 D 412
D
Sbjct: 145 D 145
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 56 GVKSIINERQDIIVRDKYKVSGTAAKLGHLTGYHHCTLLVNANKADLSKALAKRETHATA 235
G+K + R + + R+K V A + L+G+++ +KAD+ +ALA +
Sbjct: 633 GIKIEYHSRIEFLPREKMTV---AIPMSELSGWYNAEARSPVDKADMMRALANVDRFTVR 689
Query: 236 ST 241
+T
Sbjct: 690 AT 691
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 56 GVKSIINERQDIIVRDKYKVSGTAAKLGHLTGYHHCTLLVNANKADLSKALAKRETHATA 235
G+K + R + + R+K V A + L+G+++ +KAD+ +ALA +
Sbjct: 633 GIKIEYHSRIEFLPREKMTV---AIPMSELSGWYNAEARSPVDKADMMRALANVDRFTVR 689
Query: 236 ST 241
+T
Sbjct: 690 AT 691
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 329 CGGTRSLAQFVGFPQSLDYPSRSDSPPRTASMPSRESHV 213
C G+ ++Q GFP +L D+ R ++P + V
Sbjct: 265 CPGSFGVSQSAGFPDTLQMLIEEDTTERKINLPQNSTSV 303
>D49525-2|BAA08471.1| 567|Caenorhabditis elegans TPA-1B protein.
Length = 567
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 119 GTAAKLGHLTGYHHCTLLVN----ANKADLSKAL--AKRETHATASTRSEVANL 262
G ++ ++ +H C L++ N+ LS+ KR THATAS +ANL
Sbjct: 128 GLRCEVCNVACHHKCERLMSNLCGVNQKQLSEMYHEIKRGTHATASCPPNIANL 181
>D49525-1|BAA08470.1| 704|Caenorhabditis elegans TPA-1A protein.
Length = 704
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 119 GTAAKLGHLTGYHHCTLLVN----ANKADLSKAL--AKRETHATASTRSEVANL 262
G ++ ++ +H C L++ N+ LS+ KR THATAS +ANL
Sbjct: 265 GLRCEVCNVACHHKCERLMSNLCGVNQKQLSEMYHEIKRGTHATASCPPNIANL 318
>D14815-1|BAA03556.1| 557|Caenorhabditis elegans TPA-1 protein.
Length = 557
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 119 GTAAKLGHLTGYHHCTLLVN----ANKADLSKAL--AKRETHATASTRSEVANL 262
G ++ ++ +H C L++ N+ LS+ KR THATAS +ANL
Sbjct: 118 GLRCEVCNVACHHKCERLMSNLCGVNQKQLSEMYHEIKRGTHATASCPPNIANL 171
>AF078781-3|AAC26917.1| 567|Caenorhabditis elegans Tpa
(tetradecanoyl phorbol acetate)resistant protein 1,
isoform b protein.
Length = 567
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 119 GTAAKLGHLTGYHHCTLLVN----ANKADLSKAL--AKRETHATASTRSEVANL 262
G ++ ++ +H C L++ N+ LS+ KR THATAS +ANL
Sbjct: 128 GLRCEVCNVACHHKCERLMSNLCGVNQKQLSEMYHEIKRGTHATASCPPNIANL 181
>AF078781-2|AAC26916.1| 704|Caenorhabditis elegans Tpa
(tetradecanoyl phorbol acetate)resistant protein 1,
isoform a protein.
Length = 704
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 119 GTAAKLGHLTGYHHCTLLVN----ANKADLSKAL--AKRETHATASTRSEVANL 262
G ++ ++ +H C L++ N+ LS+ KR THATAS +ANL
Sbjct: 265 GLRCEVCNVACHHKCERLMSNLCGVNQKQLSEMYHEIKRGTHATASCPPNIANL 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,471,004
Number of Sequences: 27780
Number of extensions: 182941
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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