Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H22
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    24   5.2  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   5.2  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    23   6.9  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   9.1  

>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 218 NHPASGQMIHRIRRHAQGFHR 156
           +HPA  +   R+RR+  GF R
Sbjct: 236 HHPADVEEARRLRRYNMGFSR 256


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 272 GSSKSMPLSAYRFFSPPVNHPAS 204
           G + + P      F PP+ HPA+
Sbjct: 125 GKTNTFPSQVPNMFGPPLYHPAA 147


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 50  IDARVRHCQENVSNP 6
           IDAR+R C   +SNP
Sbjct: 548 IDARIRKCLLQLSNP 562


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 120 NVNIER*HLSSSAVETLRMSSDSMNHLS*CWVINRRTKESIRAQRHTLRT 269
           +VNI+  H+S S    L    +S++  +    + +R  E I +Q   LRT
Sbjct: 812 SVNIKLEHISDSMQSVLDNYRESISKQNEAIEMGKRDIEEITSQLSILRT 861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,364
Number of Sequences: 5004
Number of extensions: 16240
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)