Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H22
         (290 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    27   3.3  
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    27   3.3  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    26   4.4  
01_06_1682 - 39130696-39131705,39132355-39132583                       26   5.8  
08_02_1613 + 28236989-28238593                                         25   7.7  

>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 ELKCGGNLAHVVGFDESSVLMLG 214
           +L C GN+AHVV     S  MLG
Sbjct: 365 QLACAGNVAHVVVMPHVSFEMLG 387


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 IWVCQCQY*AVTPELKCGGNLAHVV 181
           I VC+CQY  + P+  CG    +V+
Sbjct: 88  IAVCECQYNLLDPDSACGDRCLNVL 112


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 198 DDSSNPTTCARFPPHLSSGVTAQY 127
           DD SNP     +P HLS+ +  +Y
Sbjct: 363 DDCSNPKCYVMWPSHLSTHIRLEY 386


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 263 KSMPLSAYRFFSPPVNH 213
           KS P+  Y F SPP NH
Sbjct: 313 KSPPIPPYYFNSPPANH 329


>08_02_1613 + 28236989-28238593
          Length = 534

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 67  NLLAVLYSNALLENLGMSMSILSGDT*AQVRWKP 168
           NLL +L++  + E+ G S+  +SGD  AQ    P
Sbjct: 495 NLLGLLFTFLVPESKGKSLEEMSGDAEAQEEAPP 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,895,974
Number of Sequences: 37544
Number of extensions: 112443
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)