Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H22
         (290 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    27   2.2  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    26   3.9  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    26   3.9  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    26   5.2  
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    26   5.2  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    26   5.2  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 77  RCCIQMRCWKIWVCQCQY*AVTPELKCGGNLAHVVGF 187
           RCC    C+     +C Y AV PEL C   + H  G+
Sbjct: 52  RCCTNEECFMS--TECSYSAVCPELFC--KIGHHPGY 84


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 147  SSSAVETLRMSSDSMNHLS 203
            SSSA  TLR SSDS  H+S
Sbjct: 1430 SSSAPITLRKSSDSSEHIS 1448


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 147  SSSAVETLRMSSDSMNHLS 203
            SSSA  TLR SSDS  H+S
Sbjct: 1606 SSSAPITLRKSSDSSEHIS 1624


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
           1, isoform a protein.
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 290 SMQESDGSSKSMPLSAYRFFSPPVNHPASGQMIHRIRRHAQG 165
           ++Q  +GSSK +  S+Y     P + PA  ++I   R   QG
Sbjct: 76  ALQRVEGSSKLLEESSYSLKHDPYSVPARKKLIDGARGILQG 117


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
           1, isoform c protein.
          Length = 999

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 290 SMQESDGSSKSMPLSAYRFFSPPVNHPASGQMIHRIRRHAQG 165
           ++Q  +GSSK +  S+Y     P + PA  ++I   R   QG
Sbjct: 76  ALQRVEGSSKLLEESSYSLKHDPYSVPARKKLIDGARGILQG 117


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
           C.elegans vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 290 SMQESDGSSKSMPLSAYRFFSPPVNHPASGQMIHRIRRHAQG 165
           ++Q  +GSSK +  S+Y     P + PA  ++I   R   QG
Sbjct: 76  ALQRVEGSSKLLEESSYSLKHDPYSVPARKKLIDGARGILQG 117


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
           protein C34G6.1 protein.
          Length = 1768

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 113 VCQCQY*AVTPELKCGGNLAHVVGFDESSV 202
           +C+C    V+ E++ G  + +V GFD   V
Sbjct: 541 LCKCLRTLVSREVEAGRKMDYVTGFDNPKV 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,682,886
Number of Sequences: 27780
Number of extensions: 91591
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)