Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H22
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   9.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   9.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 MSSDSMNHLS*CWVINRRTKESIRAQR 254
           +S D  N +   + + RRT ES+ A+R
Sbjct: 546 LSVDHFNAVLDQYPLMRRTMESVAAER 572


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 MSSDSMNHLS*CWVINRRTKESIRAQR 254
           +S D  N +   + + RRT ES+ A+R
Sbjct: 514 LSVDHFNAVLDQYPLMRRTMESVAAER 540


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 104 SNNAFEYNTANKF 66
           +NN ++YN  NK+
Sbjct: 92  NNNNYKYNYNNKY 104


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 253 GILLELPSDSCI 288
           GI LE+PS  CI
Sbjct: 129 GIDLEMPSVECI 140


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 56  ELIDARVRHCQENVS 12
           +L++ R+RH Q  +S
Sbjct: 426 DLVEHRIRHSQIGIS 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,447
Number of Sequences: 438
Number of extensions: 1171
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)