Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H21
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    31   0.13 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   6.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.4  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   8.4  

>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +1

Query: 16  SAILLNLKFILF*THGILFTKVACYLLIIVMFSLHLNIFCDHEYVKNSS 162
           +A+ LN K ++    GI  ++ AC ++  +M +L+LN+   +EYVK  S
Sbjct: 146 NAMQLNKKVLINCQMGI--SRSACLMIAFIMKTLNLNVSDAYEYVKERS 192


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 226 ISVRFIYGTNCINQRTTIYC 285
           ++V   +G+NCIN+ T+I C
Sbjct: 139 VNVACGHGSNCINRMTSIEC 158


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 222 ACAALPPRRGTAT 184
           +C ALPP+RG AT
Sbjct: 19  SCIALPPQRGVAT 31


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 286 FVRFRYGNFNVKSIRPVVVRIS*LTMTNK*RSWKLMTQTTTELAACLD 429
           F RF+   FN + +  V ++   LT +NK    K+  +  T    C D
Sbjct: 583 FYRFKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFCKYETTGGVCND 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,553
Number of Sequences: 5004
Number of extensions: 44172
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)